This is for the development of the RSCD_v4 server daemon. The code is GPL licensed. This code was black box reverse engineered and does not contain any copyrighted intellectual property.
Repository of desktops and programs for the Cygwin platform
A large repository of open-source programs built for Cygwin, including X11 desktops, language interpreters, multimedia frameworks, cross-compiler toolchains, and much more. Also hosted here is the cygport tool for building Cygwin packages. cygport releases and the Ports Git repositories are hosted here; Ports packages are available from the website.
Convert heightmaps to stl
Small tool to convert Heightmap images (grayscale) to stl models. Usage: java -jar heightmap2stl.jar 'path to imagefile' 'height of model' 'height of base' http://www.thingiverse.com/thing:15276
The Trinity RNA-Seq Assembly project provides software solutions targeted to the reconstruction of full-length transcripts and alternatively spliced isoforms from Illumina RNA-Seq data.
basE91 is an advanced method for encoding binary data as ASCII characters. It is similar to UUencode or base64, but is more efficient. The overhead produced by basE91 depends on the input data. It amounts at most to 23% and can range down to 14%.
TestGen4J is an open-source, automaticJava test generator that creates standard JUnit test cases from Java class or source files. In addition to reducing manual testing, it provides a data driven test harness with an automatic failed test case utility.
JWhoisServer: java whoisserver / java whois server : a small, fast and highly configurable RFC 3912 compliant whois server written in java (platform independent) and using a RDBMS (mysql, postgreSQL, oracle, SQLite3, HSQLDB, JavaDB / Apache Derby, CUBRID, firebird2, H2 Database Engine, ...) as a storage engine.
JaNaG is a Java random name generator for role-games, authors, and the like. It is based on a name fragment database that creates relatively reasonably sounding names. It can run as applet, GUI appliance, command line tool, or on a server-client basis.
DirectX 1.x - 8.x uninstaller/cleaner
Lets you uninstall DirectX 1.x - 8.x including bogus or beta installations from your computer and than re-install a current or an earlier versions. Use with caution!
SableVM is a clean-room, highly portable and efficient Java virtual machine. Its goals are to be reasonably small, fast, and compliant with the various specifications (JVM specification, JNI, invocation interface, etc.).
This project aims to promote the MultiAgent Programming (MAP) approach by providing a suitable integration of tools and languages for programming the following dimensions: agents (Jason), environment (Cartago), and organisation (Moise).
cobol2j reads or writes COBOL or RPG data files imported from mainframes, AS/400 or Baby/36 environment. Packed decimal, zoned or packed date fields decoding included. EBCDIC conversion. ETL ISAM data to any other platform. PC Cobol ( ASCII ) supported.
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .
The VCS to ICS Calendar Converter allows you to convert VCALENDAR files (for example generated by Nokia nbuexplorer or Microsoft Works) to the newer iCalendar format, used by Android and iOS for example. It allows the parsing of events and todo's.
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of high throughput sequencing reads with several deployment alternatives for different kinds of users. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. We also provide a user interface for bowtie2, alignments sorting, merging of variants from different samples, functional annotation, filtering, format conversion, and several additional features. Note: The quick download (green) button will provide you the jar file for command line usage. For other usage alternatives including the Eclipse plugin, please visit the wiki (https://sourceforge.net/p/ngsep/wiki/Home/)
PIQLE is a Platform Implementing Q-LEarning (and other Reinforcement Learning) algorithms in JAVA. Version 2 is a major refactoring. The core data structures and algorithms are in piqle-coreVersion2. Examples are in piqle-examplesVersion2. A complete doc
Location tracks objects based on SSID strength in 2D environments
This simple algorithm gives an example of location tracking in indoor environment using WiFi signals strengths sent to a local sever machine which then determines the clients location.
dtdns updater client, free java application
Automatic IP updater (it works only when the IP was changed). The client was written in java and supports Windows, Mac, Linux GUI and Linux Terminal. It is a FREEWARE. Ubuntu autostart setting: bash -c "sleep 10 && /usr/bin/java -jar /PATH/dtdns_updater.jar"
LBRC enables a J2ME and bluetooth equipped device to control a linux computer
JVnSegmenter is a Java-based and open-source Vietnamese word segmentation tool. The segmentation model was trained on about 8,000 sentences using Conditional Random Fields (FlexCRFs). This tool would be useful for Vietnamese NLP community.
Speech recognition application builder and library
Java library and tools to create open source speech recognition applications. Generates dialogs for conversational interfaces. Works with a popular open source speech recognition library.
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module.
C++ exception (and generic) stack trace library (now libinstrument)
Project is migrating to libinstrument (https://sourceforge.net/projects/libinstrument/) Libcsdbg is a C++ exception stack tracer, offers the tools to create and process exception traces, the path an exception has propagated up the call stack, unwinding it, up to the point where it was handled. The traces are detailed with demangled function signatures and addr2line info (source file and line of each function call). Libcsdbg will perform flawlessly with multi-threaded programs, with dynamically linked shared objects (DSO) and with any statically linked library. Libcsdbg helps the developer/tester also create stack traces of any thread, at any point during, as a snapshot of the runtime call graph. This is very useful in cases of fatal errors, reception of terminating signals or process abortion/termination (such as segmentation faults)
This project is just the bridge between MSMQ and JMS (JAVA). Based on JNI concept which helps to create a DLL by using Visual C++. The java methods calls the C++ class which is used to make dll and this C++ class return back messages of MSMQ.
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington