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Hypernomicon is a personal productivity/database application for researchers that combines structured note-taking, mind-mapping, management of files (e.g., PDFs) and folders, and reference management into an integrated environment that organizes all of the above into semantic networks or hierarchies in terms of debates, positions, arguments, labels, terminology/concepts, and user-defined keywords by means of database relations and automatically generated hyperlinks (hence ‘Hyper’ in the name). Hypernomicon keeps track of all these things in a highly structured, thoroughly indexed and user friendly relational database, automatically generates semantic hyperlinks between all of them, and presents this information in many different forms so that you are constantly informed of ways all of your information is related that you had not realized.

...This is the first public release in 2016. Hyperbole has been greatly expanded and modernized for use with the latest Emacs 25 releases; it supports GNU Emacs 24.4 or above. It contains an extensive set of improvements that can greatly boost your day-to-day productivity with Emacs and your ability to manage information stored across many different machines on the internet. People who get used to Hyperbole find it helps them so much that they prefer never to use Emacs without it. Hyperbole includes easy-to-use, powerful hypertextual button types and links that can be made without the need to learn a markup language. ...

StorySurfer is an application to write short stories, novels, scripts, other documents; handle creating/modifying project/story info, characters + their relationships, locations, items, timelines, submission tracking, ToDo list, & research notation.