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Showing 29 open source projects for "example"
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. For example, we offer the generic SurrogateTest, which is fully compatible with TimeseriesSurrogates.jl, and the LocalPermutationTest for conditional independence testing. -
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HomotopyContinuation.jl
A Julia package for solving systems of polynomials
...We can optimize any objective whose gradient is an algebraic function using homotopy methods by computing all critical points of the objective function. An important special case is when the objective function is the euclidean distance to a given point. An example of an non-algebraic objective function whose derivative is algebraic is the Kullback–Leibler divergence. Homotopy continuation methods allow us to study the conformation space of molecules as for example cyclooctane (CH₂)₈. This molecule consists of eight carbon atoms aligned in a ring, and eight hydrogen atoms, each of which is attached to one of the carbon atoms. -
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Oceananigans.jl
Julia software for fast, friendly, flexible fluid dynamics on CPUs
Oceananigans is a fast, friendly, flexible software package for finite volume simulations of the nonhydrostatic and hydrostatic Boussinesq equations on CPUs and GPUs. It runs on GPUs (wow, fast!), though we believe Oceananigans makes the biggest waves with its ultra-flexible user interface that makes simple simulations easy, and complex, creative simulations possible. -
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ONNX.jl
Read ONNX graphs in Julia
ONNX.jl is in the process of a total reconstruction and currently supports saving & loading graphs as a Umlaut.Tape. When possible, functions from NNlib or the standard library are used, but no conversion to Flux is implemented yet. See resnet18.jl for a practical example of graph loading. -
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BlockArrays.jl
BlockArrays for Julia
...This means that BlockArray supports fast noncopying extraction and insertion of blocks while PseudoBlockArray supports fast access to the full matrix to use in for example a linear solver. -
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ImplicitGlobalGrid.jl
Distributed parallelization of stencil-based GPU and CPU applications
ImplicitGlobalGrid is an outcome of a collaboration of the Swiss National Supercomputing Centre, ETH Zurich (Dr. Samuel Omlin) with Stanford University (Dr. Ludovic Räss) and the Swiss Geocomputing Centre (Prof. Yuri Podladchikov). It renders the distributed parallelization of stencil-based GPU and CPU applications on a regular staggered grid almost trivial and enables close to ideal weak scaling of real-world applications on thousands of GPUs [1, 2, 3]. ImplicitGlobalGrid relies on the... -
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ImplicitDifferentiation.jl
Automatic differentiation of implicit functions
...Reasons can vary depending on your backend, but the most common include calls to external solvers, mutating operations or type restrictions. Those for which automatic differentiation is very slow. A common example is iterative procedures like fixed point equations or optimization algorithms. -
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GDAL.jl
Thin Julia wrapper for GDAL - Geospatial Data Abstraction Library
...It provides only a C style usage, where resources must be closed manually, and datasets are pointers. Other packages can build on top of this to provide a more Julian user experience. See for example ArchGDAL.jl. Most users will want to use ArchGDAL.jl instead of using GDAL.jl directly. -
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PackageCompiler
Compile your Julia Package
...You can save loaded packages and compiled functions into a file (called a sysimage) that you pass to Julia upon startup. Typically the goal is to reduce latency on your machine; for example, you could load the packages and compile the functions used in common plotting workflows using that saved image by default. In general, sysimages are not relocatable to other machines; they'll only work on the machine they were created on. -
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Query.jl
Query almost anything in julia
Query is a package for querying julia data sources. It can filter, project, join and group data from any iterable data source, including all the sources supported in IterableTables.jl. One can for example query any of the following data sources: any array, DataFrames, DataStreams (including CSV, Feather, SQLite, ODBC), DataTables, IndexedTables, TimeSeries, Temporal, TypedTables and DifferentialEquations (any DESolution). The package currently provides working implementations for in-memory data sources, but will eventually be able to translate queries into e.g. ... -
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PkgTemplates.jl
Create new Julia packages, the easy way
PkgTemplates.jl is a Julia package that automates the creation of new Julia packages by generating a project scaffold with common best practices. It helps users quickly set up reproducible project structures with Git integration, CI configuration, testing frameworks, documentation, and more. By using customizable templates, PkgTemplates streamlines package development and enforces consistency across Julia projects. -
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NetCDF.jl
NetCDF support for the julia programming language
NetCDF support for the Julia programming language, there is a high-level and a medium-level interface for writing and reading netcdf files. The dimensions "x1" and "t" of the variable are called "x1" and "t" in this example. If the dimensions do not exist yet in the file, they will be created. The dimension "x1" will be of length 10 and have the values 11..20, and the dimension "t" will have length 20 and the attribute "units" with the value "s". -
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Graphs.jl
An optimized graphs package for the Julia programming language
The goal of Graphs.jl is to offer a performant platform for network and graph analysis in Julia, following the example of libraries such as NetworkX in Python. Offers a set of simple, concrete graph implementations – SimpleGraph (for undirected graphs) and SimpleDiGraph (for directed graphs), an API for the development of more sophisticated graph implementations under the AbstractGraph type, and a large collection of graph algorithms with the same requirements as this API. -
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Model Zoo
Please do not feed the models
FluxML Model Zoo is a collection of demonstration models built with the Flux machine learning library in Julia. The repository provides ready-to-run implementations across multiple domains, including computer vision, natural language processing, and reinforcement learning. Each model is organized into its own project folder with pinned package versions, ensuring reproducibility and stability. The examples serve both as educational tools for learning Flux and as practical starting points for... -
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Stan.jl
Stan.jl illustrates the usage of the 'single method' packages
A collection of example Stan Language programs demonstrating all methods available in Stan's cmdstan executable (as an external program) from Julia. For most applications one of the "single method" packages, e.g. StanSample.jl, StanDiagnose.jl, etc., is a better choice for day-to-day use. To execute the most important method in Stan ("sample"), use StanSample.jl. -
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HDF5.jl
Save and load data in the HDF5 file format from Julia
...HDF5 uses ASCII names for these different objects, and objects can be accessed by Unix-like pathnames, e.g., "/sample1/tempsensor/firsttrial" for a top-level group "sample1", a subgroup "tempsensor", and a dataset "firsttrial". For simple types (scalars, strings, and arrays), HDF5 provides sufficient metadata to know how each item is to be interpreted. For example, HDF5 encodes that a given block of bytes is to be interpreted as an array of Int64, and represents them in a way that is compatible across different computing architectures. However, to preserve Julia objects, one generally needs additional type information to be supplied, which is easy to provide using attributes. -
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ReTest.jl
Testing framework for Julia
...Filtering run testsets with a Regex, which is matched against the descriptions of testsets. This is useful for running only part of the test suite of a package. For example, if you made a change related to addition, and included "addition" in the description of the corresponding testsets, you can easily run only these tests. -
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CBinding.jl
Automatic C interfacing for Julia
...In order to support the fully automatic conversion and avoid name collisions, the names of C types or functions are mangled a bit to work in Julia. Therefore everything generated by CBinding.jl can be accessed with the c"..." string macro to indicate that it lives in C-land. As an example, the function func above is available in Julia as c"func". It is possible to store the generated bindings to more user-friendly names (this can sometimes be automated, see the j option). Placing each C declaration in its own macro helps when doing this manually. -
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LaTeXStrings.jl
convenient input and display of LaTeX equation strings for Julia
...Johnson. With ordinary strings in Julia, to enter a string literal with embedded LaTeX equations you need to manually escape all backslashes and dollar signs: for example, $\alpha^2$ is written \$\\alpha^2\$. Also, even though IJulia is capable of displaying formatted LaTeX equations (via MathJax), an ordinary string will not exploit this. -
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Literate
Simple package for literate programming in Julia
Literate is a package for Literate Programming. The main purpose is to facilitate writing Julia examples/tutorials that can be included in your package documentation. Literate can generate markdown pages (for e.g. Documenter.jl), and Jupyter notebooks, from the same source file. There is also an option to "clean" the source from all metadata, and produce a pure Julia script. Using a single source file for multiple purposes reduces maintenance, and makes sure your different output formats are... -
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PlutoSliderServer.jl
Web server to run just the `@bind` parts of a Pluto.jl notebook
...For this, take a look at our template repository that used GitHub Actions and PlutoSliderServer to generate a website on every commit. Many input elements only have a finite number of possible values, for example, PlutoUI.Slider(5:15) can only have 11 values. For finite inputs like the slider, PlutoSliderServer can run the slider server in advance, and precompute the results to all possible inputs (in other words: precompute the response to all possible requests). -
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HCubature.jl
Pure-Julia multidimensional h-adaptive integration
...Because hcubature is written purely in Julia, the integrand f(x) can return any vector-like object (technically, any type supporting +, -, * real, and norm: a Banach space). You can integrate real, complex, and matrix-valued integrands, for example. Note that HCubature assumes that your function f(x) can be computed at arbitrary points in the integration domain. (This is the ideal way to do numerical integration.) If you instead have f(x) precomputed at a fixed set of points, such as a Cartesian grid, you will need to use some other method (e.g. Trapz.jl for a multidimensional trapezoidal rule). -
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BenchmarkTools.jl
A benchmarking framework for the Julia language
BenchmarkTools makes performance tracking of Julia code easy by supplying a framework for writing and running groups of benchmarks as well as comparing benchmark results. This package is used to write and run the benchmarks found in BaseBenchmarks.jl. The CI infrastructure for automated performance testing of the Julia language is not in this package but can be found in Nanosoldier.jl. Our story begins with two packages, "Benchmarks" and "BenchmarkTrackers". The Benchmarks package... -
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ParallelStencil.jl
Package for writing high-level code for parallel stencil computations
...Performance similar to CUDA C / HIP can be achieved, which is typically a large improvement over the performance reached when using only CUDA.jl or AMDGPU.jl GPU Array programming. For example, a 2-D shallow ice solver presented at JuliaCon 2020 [1] achieved a nearly 20 times better performance than a corresponding GPU Array programming implementation; in absolute terms, it reached 70% of the theoretical upper performance bound of the used Nvidia P100 GPU, as defined by the effective throughput metric, T_eff. ParallelStencil relies on the native kernel programming capabilities of CUDA.jl and AMDGPU.jl and on Base.Threads for high-performance computations on GPUs and CPUs, respectively. ... -
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FEniCS.jl
A scientific machine learning (SciML) wrapper for the FEniCS
...Interfaces have been provided for the main functions and their attributes, and instructions to add further ones can be found here. A high-level API for usage with DifferentialEquations. An example can be seen in solving the heat equation with high-order adaptive time-stepping. Various gists/jupyter notebooks have been created to provide a brief overview of the overall functionality and of any differences between the pythonic FEniCS and the Julian wrapper. DifferentialEquations.jl ecosystem. Paraview can also be used to visualize various results just like in FEniCS.
