Showing 8 open source projects for "gene"

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  • 1

    gene-archive

    Static site generator for a family history archive: interactive tree, person cards, documents, places map, story. RU/EN/RO interface, living people hidden, GEDCOM import/export. Генератор сайта семейного архива.

    gene-archive is an MIT-licensed generator for family history websites. It combines an interactive family tree, person cards linked to documentary sources, scans and PDF previews, family narratives and a places map. Data is stored in one JSON file, with GEDCOM import/export and an English, Russian and Romanian interface. Generated static HTML can be hosted without a database.
    Downloads: 0 This Week
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  • 2
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)...
    Downloads: 1 This Week
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  • 3
    Clustergrammer

    Clustergrammer

    An interactive heatmap visualization built using D3.js

    ...Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Biology-Specific Features) to facilitate the exploration of gene-level biological data.
    Downloads: 1 This Week
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  • 4

    oasis-genomics

    Oasis Genomics cancer omics integration portal

    OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets.
    Downloads: 0 This Week
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  • 5

    Digital Expression on the Web

    DEW is a platform that allows users to explore RNA-Seq data

    ...When provided with multiple isoforms and in the ‘contextual’ mode, corrections include a expectation maximization algorithm estimates effective expression profiles and a corrected alignment is produced. For each gene the user provides, DEW computes coverage descriptive statistics (RPKM, FKMP and total, mean and median corrected counts), expression profiles (normalized as R/FPKM and trimmed mean of fold change). DEW allows users to explore the data by providing interactive graphs.
    Downloads: 0 This Week
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  • 6
    BioAGENDA
    AGENDA (Application for mining Gene Ontology Data)
    Downloads: 0 This Week
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  • 7
    PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
    Downloads: 0 This Week
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  • 8
    OntoDas is a web-based tool that uses information visualisation techniques to provide an intuitive, interactive environment for constructing complex queries against the Gene Ontology Database.
    Downloads: 0 This Week
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