Search Results for "sed ("

a sed like script language for parsing context free languages. the language implements a virtual machine which is appropriate for parsing and transforming context free languages. an implementation in c++ is nearing completion (apr07)

...It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.

A Java library to facilitate SED-ML support for systems biology applications to read, validate, edit, and write SED-ML documents in compliance with MIASE guidelines. Also contains modules to execute simulation tasks and produce outputs. This project also contains the SED-ED editor application for SED-ML.

Text and binary file transformation. Text-based sed, awk, etc. failed me when I needed a simple way to transform binary files to something else. Transformenator is what resulted.

A stream editor that can be invoked by another java program or also the command line. It can handle binary data too. Unlike newline based programs like sed, it allows different ways of reading the stream through the traverser, buffer and commands interfaces. A traverser decides how the data is read. This data is stored in the buffer. The commands decide what to do with this data. All data is handled as characters, by specifying an encoding. For binary data, the encoding ISO-8859-1 is used by default, has 256 single-byte characters. ...

...The advantages by using CSV as input and output are the following: - Many applications allow an export of its data to CSV or Excel(were it could be saved to CSV) - It is possible to pre- and postprocess the data, e.g removing version numbers before comparing - It is easy to create CSV data from logfiles and other resources by using unix tools like sed or awk - CSV can be loaded into other applications, especially Excel, were it can be formatted by macros for analyzing.

herman is an edit in place utility like (a very simple subset of) sed or perl, but implemented in java.