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1

KAnalyze

DNA/RNA Sequence K-mer Toolkit

KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API.

Downloads: 1 This Week

Last Update: 2018-11-20
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2

RAMBO-K

Read Assignment Method Based On K-mers

RAMBO-K is a tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. Please cite our publication (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137896) if you use RAMBO-K. We moved to GitLab, please visit our homepage for latest development. The latest stable versions of RAMBO-K will still be provided here.

Downloads: 0 This Week

Last Update: 2016-08-10
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3

Ferox

Ferox - Sequence Alignment with Fuzzy K-mers

Ferox is a DNA sequence alignment application that uses fuzzy k-mers to quickly and accurately align sets of sequence reads against a reference genome. Ferox can also be used to align whole genomes. The seeding mechanism used by Ferox is highly configurable, allowing custom fuzzy seeds to be created declaratively in an XML configuration file.

Downloads: 0 This Week

Last Update: 2013-02-01
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4

UniqueMER

A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.

Downloads: 0 This Week

Last Update: 2013-04-15
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