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APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required.
... newest jar file to the "Plugins" directory which should be located in the directory of your local IQM main application.
IQM: https://sourceforge.net/projects/iqm/
Authors of this plugin:
Ion Andronache, University of Bukarest, Romania
Daniel Peptenatu, University of Bukarest, Romania
Helmut Ahammer, Medical University of Graz, Austria
CallSim is a software application that provides evidence for the validity of base calls believed to be sequencing errors and it is applicable to Ion Torrent and 454 data.
CallSim provides a final classification or rescue of a base/indel in reads, where putative variants have been identified via typical SNP/indel workflows.
plots rendered by: JFreeChart library http://sourceforge.net/projects/jfreechart/
OpenChord is an open source implementation of the Chord distributed hash table as described in the paper by Ion Stoica et al. "Chord: A scalable peer-to-peer lookup service for internet applications". It is available under GNU GPL.
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tbot (transport,business,object,transformer)is a Java/C# object marshaller/unmarshaller that maps transport objects to user objects. Overcomes deficiencies of other projects that require predefined generated classes. Support for: TibRV,ION,JMS,FIX, etc.
A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)