Search Results for "entropy"

COLA is the abbreviation of Clean Object-Oriented and Layered Architecture, which stands for "Clean Object-Oriented and Layered Architecture." At present, COLA has developed to COLA 4.0. COLA is divided into two parts, COLA architecture and COLA components. The meaning of architecture is the structure of elements. The COLA architecture was born for this purpose, and its core responsibility is to define a good application structure and provide the best practice of the best application...

The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.

...Currently, it includes the software systems KReator and MECore and the library Log4KR: - KReator is an integrated development environment (IDE) for relational probabilistic knowledge representation languages such as Bayesian Logic Programs (BLPs), Markov Logic Networks (MLNs), Relational Maximum Entropy (RME), First-Order Probabilistic Conditional Logic (FO-PCL), and others. - MECore is a shell-based system that allows the user to create propositional knowledge bases, to perform a variety of belief change operations, and to query a knowledge base with respect to the principle of optimum entropy. - Log4KR is a library providing data structures to represent knowledge bases in various logic formalisms (propositional, relational, conditional, probabilistic, ...) and providing algorithms to perform reasoning operations

MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the helix coil transition and then the melting temperature. Four types of hybridization are possible : DNA/DNA, RNA/RNA, RNA/DNA and mRNA/RNA.

This project contains the files required to run the Cross-Entropy Relational Reinforcement Learning Agent (CERRLA) algorithm. Note that a copy of the JESS rules engine will also be required.

Conversion between different grammar frameworks is of great importance to comparative performance analysis of the parsers developed on them. This tool can convert CCG derivations to PTB trees by using Max Entropy models as well as visualizing the tree graphs. The main technical innovation presented here is the effective conversion method which achieves a F score over 95%.

EntropyEngine is a Java based 2D game engine. This project is intended for learning game engine design, and detailed tutorials can be found at the project's homepage.

ПО для расчета энтропийных характеристик агрегированного трафика.

Maximum entropy is a powerful method for constructing statistical models of classification tasks, such as part of speech tagging in Natural Language Processing. Several example applications using maxent can be found in the OpenNLP Tools Library.

SALaMy (Semantic Argument Labelling using Maximum Entropy) is a Semantic Role Labelling project using the Apache UIMA framework. Semantic arguments are labelled based on the Maximum Entropy paradigm.

The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.

BeeCrypt is an ongoing project to provide a strong and fast cryptography toolkit. Includes entropy sources, random generators, block ciphers, hash functions, message authentication codes, multiprecision integer routines, and public key primitives.

...It is based on arithmetic coding compression. Just a proof of concept of the implementation of a statistical compressor. Aimple Java GUI interface provided. Best efficiency than huffman compressor. Entropy and information

JTextPro: A Java-based Text Processing tool that includes sentence boundary detection (using maximum entropy classifier), word tokenization (following Penn conventions), part-of-speech tagging (using CRFTagger), and phrase chunking (using CRFChunker).

Project includes: JRIO (drawing package), Lang (Java interpreter written in Java), and Cirrus (genetic and evolutionary algorithms, with evolvable virtual machine). Planned modules for entropy and information studies during an evolutionary process.

Detecting malicious network traffic using entropy based methods.