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Simple Editing Environment (SEE) is a photo editing software written in Java with support of Java Media Framework (JMF) and Java Advanced Imaging (JAI) to create a simple environment for your editing needs.
This application was created on the request of my country's medical council. Its purpose is to serve as an electronic registry of all the doctors in the country.
QSAR is a project that aims to build a GUI that enables people to build quantitative structure activity (or property) relationship models. It will use parts of CDK (cdk.sf.net), JOELib (joelib.sf.net), R (www.r-project.org) and other projects.
Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org
These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases.
See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.
Prototype of a Java Card application for smart cards and its client application. It was developed with the support of JML (Java Modeling Language) used to formally specify the requirements for developing the HealthCard application in Java Card.
Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates...
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
The goal of this project is to formalize, extend, and make freely available code I wrote as a medical student and intern physician that tags and typesets medical data in the formats used by physicians for rapid interpretation.
Quantitative Evalution of Blush: a program to assess myocardial reperfusion on coronary angiograms. This program calculates a value that can be used for risk classification of STEMI patients or as a surrogate endpoint in clinical trials.
ConTextKit is a Java-based implementation of Wendy Chapman's ConText algorithm for annotating the context of medical documents, specifically the negation, temporality, and experiencer.
BrainFX, a customization of GenericFX for the field for functional Magnetic Resonance Imaging (fMRI). It defines java classes, data hierarchy and data standard for the field of fMRI.
This software is related to ST-Guide project, an initiative arisen at the Institute of Computing of State University of Campinas (IC-UNICAMP) to solve the practice guideline formalization and implementation problems.
A simple application designed to help manage your family's medical prescriptions. It allows a family to track prescriptions per person and output them in PDF for dissemination. Hopefully it proves useful, and helps ease the stress of health care.