Search Results for "research" - Page 6
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Showing 4992 open source projects for "research"
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Stanford Data Miner
Tools for integration and analysis of heterogeneous immunological data
An extensive description of this system is published in the Journal of Translational Medicine (http://www.translational-medicine.com/). In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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JSchemePlus
An hack of Jscheme with a lot of enhancements and additional features.
JSchemePlus is an hack of Jscheme 1.4 by Peter Norvig. It allows to redistribute a script in an executable JAR file of only ~40K and implements all of R4RS with a lot of additional functions, like: (execute command) (random) (sequence from up-to step) (split list element) (string-split string sub-string) (read-all-from-file file) (write-to-file file data) (file-size file) etc... For the complete list read the HELP file or type (help). JSchemePlus needs only the Java Virtual Machine (version... -
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JRC QSAR Model Database
(Q)SAR Model Reporting Format Inventory
In the regulatory assessment of chemicals (e.g. under REACH), Quantitative Structure Activity Models (QSAR) are playing an increasingly important role in predicting properties for hazard and risk assessment. This implies both a need to be able to identify relevant QSARs and to use them to derive estimates and/or have access to their precalculated estimates. To help meet these needs, the JRC QSAR Model Database is established and freely accessible through http://qsardb.jrc.ec.europa.eu/qmrf... -
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Thinknowlogy
The world's only naturally intelligent knowledge technology
Natural intelligence is the utilization of naturally occurring logic. This naturally occurring logic provides concrete clues for organizing natural objects, like: - Grouping objects that belong together, - Separating objects that don't belong together, - Archiving objects that have become less important. Natural language and spatial information are sources of natural intelligence: - Natural language is providing concrete logic for organizing knowledge objects, - Spatial... -
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Java 2D & 3D visual entity relationship design & modeling (ERD,SQL) for Oracle,MSSQL,Postgres,MySQL,...,Database change&dictionary management, Swing Data Binding, Apache FOP Renderer for dot matrix printers,Sparx Enterprise Architect Reports + more
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Krishnamurti's Book of Life D.Thoughts
Jiddu Krishnamurti's Book of Life|Libro de la Vida
FREE distribution of the JAVA-XML multiplatform e-book about Jiddu Krishnamurti's Book of Life (a witty daily cookie-like reflection). Ahora, lea diariamente los pensamientos de Krishnamurti en castellano- Obtenga una agenda gratis. -
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JASI - Java Event-Based Simulation Frame
JASI - Java Event-Based Simulation Framework
The JASI library provides an architecture based on a simulation kernel and elementary classes for simulation elements and event to build event-based simulation systems in Java. -
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grafx - Extensible Java Graphics Package
Extensible Line-drawing & Polygon-filling Rasterization Libs for Java
Line-drawing and polygon-filling rasterization algorithms in Java. Simple 2D package and more complex 3D package with Z-buffering. Texture mapping not supported at the moment. Color interpolation for lines, Gouraud shading for polygons fully supported. Floating point vertex coordinates, not integer. Pixel-level aliasing, not endpoint aliasing. Doesn't use Bresenham line style! Works with all Java versions. No external dependencies. Suitable for study in academic institutions,... -
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Statistics101 - Resampling Statistics
Use simulation to perform statistical analyses.
Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon (https://www.juliansimon.com/) and Peter Bruce (https://www.scientificamerican.com/author/peter-bruce/) as a new way to teach Statistics to social science students. Of course, social science students... -
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JME (Java Math Expression)
Evaluador de expresiones matemáticas para Java en español
Biblioteca para Java que implementa un potente evaluador matemático en español y un lenguaje estructurado de script, JMEScript, que hace uso de éste. Puede evaluar expresiones altamente complejas, que incluyen; * vectores * matrices * números complejos * números enteros y reales de precisión arbitraria, * expresiones booleanas * conjuntos * cadenas * diccionarios * grafos * correspondencias y relaciones finitas Permite especificar operaciones y funciones definidas por el... -
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AlgoSim
AlgoSim : création, analyse et exécution des algorithmes
AlgoSim un Logiciel de création, analyse, simulation et exécution des algorithmes. Il ne nécessite aucun apprentissage de langage de programmation. Ce logiciel n'utilise pas un éditeur de texte comme les logiciels classiques de programmation. Ce logiciel peut être utilisé par des débutants pour apprendre la programmation et exercer leurs connaissances. Il peut être utilisé par des professionnel pour tester leurs algorithmes, les vérifier et générer des programme présentables (pseudo-code ou... -
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Analyze and visualize tours in many variations, which are recorded with a GPS device, bike-, exercise- or ergometer-computer. Some highlights: Tools are available to adjust recorded data, GPS tours can be visualized in customizable maps, ...
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EasyCSP
Constraint Satisfaction Problem solving library for Java
EasyCSP is an open-source Java library for Constraint Satisfaction Programming. EasyCSP offers search algorithms for both CSPs and CSOPs. EasyCSP supports CSPs to be formalized using objects or int expressions. EasyCSP on GitHub: http://github.com/cordisvictor/easycsp-lib -
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FreeImage is a library project for developers who would like to support popular graphics image formats (PNG, JPEG, TIFF, BMP and others). Some highlights are: extremely simple in use, not limited to the local PC (unique FreeImageIO) and Plugin driven!
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FreeWRL is an Open Source, cross platform VRML2 and X3D compliant browser, with script, SAI and EAI support. Platforms supported: Linux and other Unix-style platforms; Mac OS/X; Windows. Support for mobile platforms (iOS, Android, QNX) is under development.
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Ragna Scribe
Multi-dimensional text editor in Java
Ragna Scribe is a versatile text editor which can hold multiple documents at the same time and each document organises a set of articles in a tree order. The documents are based on the Treepad 2.7 format. They can be kept encrypted on a high-standard security level (uses the file format of Password Safe). Editor has data security measures like file mirroring and history files. Try it out! -
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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Concept Framework
Dynamic Knowledge Repository
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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CiteSpace
A widely used tool for visual exploration of scientific literature.
...CiteSpace also supports basic visual analytic functions for datasets without citation-related information, for example, PubMed, CNKI, ProQuest Dissertations and Theses. CiteSpace reveals how a field of research has evolved, what intellectual turning points are evident along a critical path, and what topics have attracted attention. CiteSpace can be applied repeatedly so as to track the development of a field closely and extensively. The e-book How to Use CiteSpace explains the design principles and functions along with illustrative examples in more detail: https://leanpub.com/howtousecitespace -
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ADAMS
ADAMS is a workflow engine for building complex knowledge workflows.
ADAMS is a flexible workflow engine aimed at quickly building and maintaining data-driven, reactive workflows, easily integrated into business processes. Instead of placing operators on a canvas and manually connecting them, a tree structure and flow control operators determine how data is processed (sequentially/parallel). This allows rapid development and easy maintenance of large workflows, with hundreds or thousands of operators. Operators include machine learning (WEKA, MOA, MEKA)... -
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Privacy and Anonymity in the Internet
System for anonymous Web browsing
Our goal is to develop, implement, evaluate and provide a secure and scaleable technical infrastructure for anonymous communication. This project is supported by Deutsche Forschungsgemeinschaft (DFG). -
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WoPeD is a Java-based graphical workflow process editor, simulator and analysor using Petri Nets and supporting the PNML format.
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GeoRegression
An open source Java geometry library with a focus on 2D/3D space.
Geometric Regression Library (GeoRegression) is an open source Java geometry library for scientific computing with a focus on 2D/3D space. GeoRegression provides the ability to estimate the closest point/distance between geometric primitives, best-fit shapes, and best fit geometric transform between sets of objects. It is designed for high performance and ease of use. GeoRegression has been release under an LGPL license for both commercial and non-commercial use.
