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AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general.
AnnaF was build upon the pipeline framework Anna.
Concutest is a collection of tools designed to make the development and testing of concurrent Java programs easier and more reliable. Concutest is available under the BSD License and under active development by the JavaPLT group at Rice University.
A tool that can extract data from the Calibre SQLite database, including a commandline tool that generates OPDS catalogs. In everyone's words, it takes the metadata out of Calibre, and generates catalogs for Stanza, Aldiko and web browsers.
* Java classes for parsing text, conversion to XML or to evaluate in Java. The parser is textual-script-controlled with a syntax near Backus Naur Format, named ZBNF. * Some routines for conversion: C-Header or Java to XMI, XML-Documentation generation,
jScale is a program intended to scale and transcode multiple images. jScale is capable of scaling images to a certain dimension or by a percentage of the image's dimensions. It runs from the commandline, or through your favorite windowing system.
!!!NOTE: THIS PROJECT HAS MOVED TO GITHUB!!! RingMUD is an extensible MUD (multi-user dungeon) engine and utility set that draws inspiration from popular tabletop RPG systems and adds a dash or two of its own flavor.
HTMLtools includes several Java HTML tools for preparing Web pages. The HTMLtools program automates batch conversion of tab-delimited spreadsheet text files to HTML Web-page files, file & table editing, keyword mapping, templates, and more.
A tool for parsing Java JMX MBeans and creating Java Source code that may subsequently be used to access the MBeans through type-safe accessors. The intention is to support JMX attributes (simple and complex), operations and notifications.
Powerful Java code generator. Reads model information from simple annotated POJO class definitions. Generation of contexts, DB create scripts, and all the layers needed for an enterprise Java Application. Generator works based on Velocity templates.
IvmaiAsn ASN1/ECN/XDR Tools. A collection of the ASN.1/ECN parser, XDR-to-ASN.1 converter and pretty-printer scripts for ASN.1/ECN specifications. Contains also a formal definition of the ASN.1 built-in types, ECN encoding classes and XDR encodings.
GraphTK is a graph-generation toolkit. Providing a GUI frontend, it enables you to generate graphs describing build systems (Make, Ant) and API (Java APIs) dependencies. The generated graph data can be stored in common data formats like GraphML or GML. This project is no longer actively developed.
Maximally flat (maxflat) digital filter design in Java, with arbitrary numbers of poles and zeros. "Maximally flat" means that the magnitude frequency response has the maximum number of vanishing derivatives at 0 and pi.
Manages Java application/tool options. Options are mapped to Java Bean properties using annotations. Options can be loaded from commandline arg String[] array, an XML file, or a java properties file. Help texts can be generated.
Other spiders has a limited link depth, follows links not randomized or are combined with heavy indexing machines. This spider will has not link depth limits, randomize next url, that will be checked for new urls.
JavaCount is a simple (Code, Comments, Cyclomatic and Statements) counter for Java methods that ouput the metrics in various formats (csv, xml, etc) -- Acknowledgement: EU Funded FP6 Qualoss Project (see http://www.qualoss.eu).
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.