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The Squidy Interaction Library eases the design of "post-WIMP" user interfaces by unifying various device drivers, frameworks and tracking toolkits in a common library and provides a central and easy-to-use visual design environment. www.squidy-lib.de
Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
Distributed Computing Over P2P Networks(DisCo) is focused to provide a java framework for programmers to develop distributed software application with lesser or no time spent on distributed computing part.
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DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.
JMS/Joram implementation of the Bully election algorithm. It is a library to be used by a process' implementation to make it transparently manage coordinator's elections, while it carries out business logic. A sample application is included.
A java tool for anytime and interactive sequence mining. Aims at providing users with a way of analyzing her activity traces and extract activity schemes from them.
cy2reposition: Cytoscape 2 plugin for layout reuse
CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.
This project migrated to github
https://github.com/matthiaskoenig/cy2reposition
"Java Textual Desktop" project stands for the classical TEXT screen with java implementation inspired with Curcus which used for decades in the history of UNIX (linux).
Fuzzy logic add-in for OpenOffice.org Calc. InrecoLAN FuzzyMath allows to perform ordinary arithmetic operations and use ordinary mathematical and financial functions with fuzzy numbers. Have any ideas how to improve this project - you are welcome!
PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
Neuroph OCR - Handwriting Recognition is developed to recognize hand written letter and characters. It's engine derived's from the Java Neural Network Framework - Neuroph and as such it can be used as a standalone project or a Neuroph plug in.
PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
Currently, all existing formal tools are designed to serve as formal verifiers, using one implementation or another. JTLV is a new tool aimed to facilitate and provide a unified framework to the development of formal verification algorithms.
Program described in the paper: MUDE: A new approach for optimizing sensitivity in the target-decoy
search strategy for large-scale peptide/protein identification, 2010.
By Cerqueira, Fabio; Graber, Armin; Schwikowski, Benno; Baumgartner, Christian.
The FUSION Semantic Registry is a Web service registry that combines the use of OWL-DL, SAWSDL, and UDDI to support fine-grained semantic matchmaking with a focus in integrability-oriented service discovery (http://www.seerc.org/fusion/semanticregistry)
A query tool for repositories of ontologies. The tool allows to define a repository, either local or remote -via URIs. The tool makes it possible for users to define a query and execute it against the predefined repository.
To help math students visualize the prufer code and/or discover anything new about the prufer code not already present. Examples and live applet on webiste.
A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.