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OSCAR (Open Source Chemistry Analysis Routines) is software for the semantic annotation of chemistry papers. The modules OPSIN (a name to structure converter) and ChemTok (a tokeniser for chemical text) are also available as standalone libraries.
Deliver is a file transfer protocol and implementation designed to be a safe, open-source alternative to the most extended transfer protocols like the traditional e-mail.
BCU SDK is a C based, high level development system for creating programs for EIB/KNX BCU devices. It includes the GNU toolchain for the m68hc05 architecture (m68hc05-gcc, m68hc05-gdb, newlib). Bus access is possible using multiple methods.
jSkel es a Programmatic Skeletons Java Framework. jSkel has a set of Interfaces and Abstract Classes that should be used by java programmers in order to use the benefits of Divide & Conquer, Pipeline and Farm Programmatic Skeletons over MPJ.
Picxml is a tool for xml files management. Used as command: Picxml is a shell friendly, xpath like query tool. Used as library: picxml, is a full featured xml Parser, wich allows you to navigate, find/create/update/delete/print nodes.
HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
MXQuery is a low-footprint implementation of XQuery 1.0, XQuery Update 1.0, XQuery Fulltext 1.0 and XQuery Scripting 1.0 as well as a subset of XQuery 1.1 (windowing, try/catch). It provides extensions to do data stream processing/CEP and SOAP/REST
Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information
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nu-BDI is an extension of the Jason agent interpreter aimed at processing norms using constraints on the agent's instantiated plans. The core agent reasoning cycle now includes a component for processing norms and enforcing norm constraints.
The OWASP JBroFuzz Project is a web application fuzzer for requests being made over HTTP and/or HTTPS. Its purpose is to provide a single, portable application that offers stable web protocol fuzzing capabilities.
JLine is a java library for reading and editing user input in console applications. It features tab-completion, command history, password masking, customizable keybindings, and pass-through handlers to use to chain to other console applications.
PROJECT REPOSITORY HAS MOVED:
https://github.com/jline
Testar is a tool that reduces testing time for large Java unit test suites. It runs on top of JUnit and automatically selects individual tests to execute based on changes made to your code since the previous tool invocation.
The BSBM (Berlin SPARQL Benchmark) suite for benchmarking RDF stores or RDB-2-RDF wrappers over the SPARQL protocol. Pure RDBMS benchmarking via SQL is also possible. Visit http://www4.wiwiss.fu-berlin.de/bizer/BerlinSPARQLBenchmark for more details.
A suite of tools for Computer Science faculty members to help provided automated feedback to students as well as assist with the management of those assignments. Support is primarily for RAPTOR assignments, but Processing is supported as well.
jDip is a tool for mapping, managing, and adjudicating Diplomacy games. It has a simple but powerful graphical interface, with a richly customizable map display. Windows, Linux, Mac OS X, and Solaris are supported. Over 25 variants are supported.
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
This project is a maven plugin for Apache Lucene. Using it, a Lucene index (configuration inside a xml file) can be created from different datasources ( file/database/xml etc.). A Searcher Util helps in searching the index. Use Lucene without coding.
[2014-10-31] This project is obsolete, for latest version (6.1.3) see GitHub https://github.com/digital-preservation/droid (source) and http://www.nationalarchives.gov.uk/information-management/manage-information/preserving-digital-records/droid/ (binary)
DROID (Digital Record Object Identification) is an automatic file format identification tool. It is the first in a planned series of tools developed by The National Archives under the umbrella of its PRONOM technical registry...
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.