Search Results for "linux terminal" - Page 5
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Showing 1171 open source projects for "linux terminal"
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Access2Excel
Convert a MSAccess database into a Excel spreadsheet.
Convert a MSAccess database into a Excel spreadsheet. It's a pure java implementation, using POI (https://poi.apache.org/) and Jackcess (http://jackcess.sourceforge.net/). Use: java -jar Access2Excel.jar -inputFile=<inputFile> [-outputFile=<outputFile>] [-format=<format>] where <inputFile>: A file name to Access database (.MDB or .ACCDB) <outputFile>: A file name to Excel streadsheet (optional, default "inputFile.xls" or "inputFile.xlsx") <format>:... -
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Big Q Sort
An in-place external sort
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PPIXpress
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal... -
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jdbc2csv.jar
Command-line sql JDBC tool
jdbc2csv is a small command-line tool written in JAVA and can be used on all platforms, for which JRE 8 or higher is available. To connect to a specific DBMS the tool uses its JDBC driver. The result of the executed 'select' query is displayed in CSV format ( different standards are supported ). When there is an error the tool stops with exit code 1 and the error message is output on stderr. jdbc2csv is created with a main purpose to be used in shell-scripts. Relatively easy to configurate,... -
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xml2csv.jar
Command-line xml to csv tool
xml2csv is a small command-line tool written in JAVA and can be used on all platforms, for which JRE 8 or higher is available. Examples: 1. Help java -jar xml2csv-1.0.jar --help 2. Extract nodes from xml: java -jar xml2csv-1.0.jar --nodes test/cd_catalog.xml The result is the full node name and number of... -
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libinstrument (ex libcsdbg)
C/C++ function instrumentation (AOP, exception/stack tracing, GC)
Libinstrument is a complete and easy way to do custom function instrumentation for C/C++. The project comes ready with classic applications of instrumentation, such as AOP (Aspect Oriented Programming), Concern and Side Effect injection, stack tracing, exception tracing, basic time profiling, callgraph profiling and other. A GC (Garbage Collector) module is also under development. Libinstrument is highly portable and decoupled. The project comes with a CMake build system, integration with... -
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setupjavax
Provides Java and integrated Jython/Pyhon + Java builds
The ‘setupjavax‘ package provides extension modules for the build of Java and Jython packages. The current release supports the following commands, additional are coming soon: - build_java - Java build and packaging for Python. Supports Java packaging for Python projects, adds native Java modules for Jython. - build_jy - Integrated Python and Java builds for Jython. Supports combined Java and Python / Jython packaging. Calls build_py and build_java. -
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Tranquil Java IDE
Text-based IDE for the Java programming language
Tranquil Java (TJ) is a small and fast integrated development environment for the Java programming language. Unlike most IDEs, TJ is a Text User Interface (TUI) based program: it uses a single fixed-width font for everything, making it extremely quick and lightweight in comparison to typical Graphical User Interface (GUI) based IDEs. -
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snowflake
A modern graphical SSH client
https://github.com/subhra74/snowflake Snowflake is a graphical SSH client. It has a file browser, terminal emulator, resource/process manager, disk space analyzer, text editor, log viewer and lots of other helpful tools, which makes it easy to work with remote servers. It runs on Linux and Windows. Snowflake has been tested with Ubuntu server, CentOS, RHEL, OpenSUSE, FreeBSD, OpenBSD, NetBSD and HP-UX -
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Java Simple Codes
Simple codes in Java for beginners
This repository provides a set of simple codes to start learning programming. It aims to help new learner to familiarize with basic programming notions and simple algorithms which must be known by every programmer. Every notion or idea is presented in a separate class while the test class provides an example on how to call (or use) this notion. In a first time, no OO programming notions are introduced. They will be introduced after a fair presentation of basic notions such as variables,... -
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owl-indexer
Full-text index generator of OWL literals
owl-indexer generates full text index of OWL literal via either Apache Lucene or Sphinx Search. It is based on OWL API (https://github.com/owlcs/owlapi). -
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T-UI Linux CLI Launcher
Linux CLI Launcher for Android
Launcher, which emulates a Unix-like shell and its terminal interface, is adapted for use on mobile devices. It also implements a lot of commands. Installed applications can be launched simply by typing their name. T-UI uses the CompareString library, so it will know what you're meaning although you made typing errors. -
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CompleXChange
differential analysis of combinatorial protein complexes
The increasing wealth of transcriptomic data and current computational tools enable to infer how protein interactomes and complexomes may be assembled in specific samples. With CompleXChange this information can be exploited to conduct differential analyses of the dynamic protein complexome in a quantitative manner. The corresponding publication can be found on https://doi.org/10.1186/s12859-019-2852-z. -
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nonogram
Nonogram solver editor
This is a nonogram solver and editor. You can create save and edit solve nonograms. Uses lanterna to display terminal screen. Stores previous calculations to solve other nonograms faster https://github.com/kutaybezci/nonogram "Sample nonograms taken from Maxi Bulmaca Kumral Yayıncılık by Fatma Eger" -
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Lire un fichier texte en une ligne
Ceci est un exemple de lecture un fichier texte en une ligne en Java
Dans cet exemple, nous allons voir comment lire le contenu d'un fichier texte en une seule ligne de code et cela en utilisant deux API et en obtenant deux formats possibles. Les deux API sont : * java.nio : disponible depuis Java 4 mais vraiment efficace depuis Java 8. * Apache Commons IO : créée pour faciliter les Entrées/Sorites sous Java. Les deux formats sont : * Lire tout le contenu dans une seule chaîne (String), * Lire le contenu ligne par ligne (List<String>). -
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Alevin2
Tool for the evaluation of ALgorithms for Embedding VIrtual Networks
ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms. -
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Java Text Table Formatter is a Java library that renders tables made of characters. The user add cells and can add format characteristics like predefined/custom table styles, text alignment, abbreviation, column width, border types, colspan, etc.
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems.... -
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HSRA
Hadoop spliced read aligner for RNA-seq data
HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a... -
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JayMontana36 Pre-Built Minecraft Servers
Free Minecraft Servers tweaked for a lag-free experience!
Free Minecraft Servers that come with a few of the most popular used plugins pre-installed by default, all preconfigured for a lag-free experience! - Optimized for low-end systems (beast-like on medium to high end systems). - Low RAM usage/requirements/consumption. - CrossCompatible between many different versions of Minecraft. - One Server Supports all 1.4.x, 1.5.x, 1.6.x, 1.7.x, 1.8.x, 1.9.x, 1.10.x, 1.11.x, 1.12, 1.12.2 clients all at the same time. - Fully Supports Linux,... -
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apache spark data pipeline osDQ
osDQ dedicated to create apache spark based data pipeline using JSON
This is an offshoot project of open source data quality (osDQ) project https://sourceforge.net/projects/dataquality/ This sub project will create apache spark based data pipeline where JSON based metadata (file) will be used to run data processing , data pipeline , data quality and data preparation and data modeling features for big data. This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to... -
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CobolToCsv
Convert Cobol Data Files to/From Csv
This project will convert Cobol Data Files to/From Csv files using a Cobol Copybook. -
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MorganaXProc (Implements XProc 1.0)
A Java implementation of XProc: An XML Pipeline Language
This project is now abandoned in favour of MorganaXProc-III which implements XProc 3.0: https://sourceforge.net/projects/morganaxproc-iiise/ MorganaXProc is a full implementation of XProc: An XML Pipeline Language (W3C Recommendation 11 May 2010) written in Java, supporting all required and optional steps, the steps proposed on EXProc.org and also the document templating steps "p:in-scope-names" and "p:template". XPath 2.0 or XPath 3.0 is used as expression language. XSLT and XQuery... -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines... -
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Mavscript
Calculations in a text document
Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell.
