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Solubility provides a GUI allowing users to develop regression models to predict the aqueous solubility of a molecule. Users can choose or create descriptors and/or atomic typing parameters, train the model, and apply it to large databases. 100% Java.
Transliterator - program for converting English transliterated text to Russian and Hebrew (possibly others in the future). It's written in Java and has a GUI.
Kernel Analyzer is tool for Linux that monitor task preemptions and interruptions in the Linux Kernel.
Basically it is a Kernel Patch, that comes also with a user proc interface, a KDB interface, and a JavaGUI to display charts.
A customizable and scalable file editor. It provides a parsing and tokenizing engine. User configurable and GUI customizable. Focused on editing text based configuration files for games, can be xml config files too.
Gumshoe Desktop Search indexes local files of various formats on a Windows desktop and provides a search GUI. The project is developed in Java. It builds on other opensource projects including Lucene, Luke, SWT, tagsoup, Jakarta POI and others.
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Varsha is a GUI based, drag-and drop style DVD authoring software written in Java. It uses already available tools such as dvdauthor, mkisofs, dvd+rw-tools etc to perform various things behind scenes. If you have some mpeg files (DVD compatible), you c
SwixNG lets you define User Interfaces in XML files, narrowing down your Java code to the behaviour of the program. Via an easy-to-use API, you can integrate your own components and even localize your GUI at runtime.
Nular Shell is an SWT Java application that provides a slim GUI front-end for the Swedish web community Lunarstorm. It is based on easy-to-use classes to allow others to easily build other application utilizing the different functions on Lunarstorm.
JOBS - Java Ogame Battle Simulator - a (offline) battle simulator for the web-based strategy game ogame; features: fast (that is: about 2x faster than speedsim), written in java 1.4 (that is: quite platform independent), swing GUI (an ugly one though)
JuMP3 is a Java application that streams MP3 and Ogg Vorbis audio files from a server to a player on a local network. Both are controlled by a separate controller with a GUI based on SWT.
TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated
rirca is yet another java IRC client with an advanced GUI (java swing). It's still in a very early state right now, but already testable/sort of useable. Once in some time, it should become as good as mIRC or X-Chat or so...
Tool Suite of GUI's to manipulate data. The first tool is a GUI for XML schemas and manages/stores the xml documents. The other tool is a GUI for Hibernate. It allows users to navigate an ObjectStore and to insert, update, delete, view the objects store
Catalogs your media files (HD & CD-R). Lets you browse, sort, search and organize them once indexed. Features user-friendly GUI, hierarchical categories, ADC (.cat) & XML catalog support, filtered search & statistics, installer. Reads CD labels & mp3ID3
Update 4/14/2015
This version of the project was never fully realized. I have a much better tools and GUI that was never uploaded to SourceForge that I developed before I started down this road. I'm currently trying to track down the code. I recently logged in for a completely different reason only to notice that this software keeps getting downloaded... and there are probably lots of disappointed folks out there once they try to run it.
XSWT is an XML-based GUI-description language for SWT. The XSWT engine uses Java reflection to actually construct a user interface, so it is automatically compatible with current and future SWT controls. An Eclipse editor for XSWT files is included.
jdbHub is a Direct Connect (DC) Hub written in Java with support for Java bot/plugin. No need of GUI (bash only user are welcome!). It has a complete series of tool for hub security. Yet stable, tested on an entire week of non-stop work, over 1000 users
A GUI (interface) for mp3splt and mp3wrap written in Java. The open source alternative to AlbumWrapper. Compatible with AlbumWrapper only for splitting