Search Results for "gnu science" - Page 32
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Showing 3193 open source projects for "gnu science"
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TreeLiker
TreeLiker is a collection of fast algorithms for working with complex
TreeLiker is a collection of fast algorithms for working with complex structured data in relational form. The data can, for example, describe large organic molecules such as proteins or groups of individuals such as social networks or predator-prey networks etc. The algorithms included in TreeLiker are unique in that, in principle, they are able to search given sets of relational patterns exhaustively, thus guaranteeing that if some good pattern capturing an important feature of the problem... -
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jaRBM
A Java library for Restricted Boltzmann Machines
A Java library of Restricted Boltzmann Machines and associated algorithms. Javadoc is included in the library. -
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The AnimationS applet is a Java-based applet that is designed to allow you to create animations for browsers with a minimum of effort. It allows for not only animating, but fading, colorizing, zooming, overlays (of things like map outlines) and "portals"
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2 Java frameworks with transient and persistent object models based on nonstandard approach (less evident but faster development): an object is a set of named fields. 3 non-object libraries simplifying access to tables stored in RDB, text files, etc.
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jTrcezer
NS-2 Trace file analyzer, graph creator for wired and wireless sims
jTrcezer is a java application which can read analyze and calculate some metrics of an ns-2 network simulation. Wired, old wireless and new wireless are already supported but jTrcezer was developed in order to be easy for users to make changes or/and add new trace formats. The final results of the analyzing process are 2D charts for throughput,load,jitter,sent-forwarded-dropped packets and endtoend delay. Also jTrcezer support two different modes for these charts, As-Is and Time Average... -
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we... -
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Software agents and human actors combine their decision making skills to arrive at efficient solutions to real-life planning and scheduling problems, especially in domains where unexpected incidents require changes to existing plans.
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Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
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Search Agents - a framework for collaboration of meta-heuristic agents
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openBmap
a free and open map of wireless communicating objects
openBmap collects data and provides open maps and statistics of all communicating objects: cellular antennas, wifi hotspots. All softwares from back-end to client are open-source under AGPL v3 license. -
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A translation tools suite for Computer-Aided Translation / Computer-Assisted Translation (CAT). A translation processor with translation memory, machine translation and project support, bitext aligner/converter, TMX validator, and others.
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ImageJforXTF
Open source software for processing XTF files
This project was born from a stage at the "Signals and Images Lab (si.isti.cnr.it), Institute of Information Science and Technologies of the National Research Council of Italy". ImageJforXTF extends the open source ImageJ software with functionalities that allow to open and manage XTF files. This kind of files is used to record sonar and bathymetric data. An user can choose to open any file with extension ".xtf" so that the program parses it and shows the resulting image. Then the user can... -
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CUO
Codon Usage Optimizer
CUO is a GUI-based multiplatform software written in Java. It is open source and built with a user/developer-friendly structure. The main function of the software at the current development stage is to optimize genes to be transformed into the Chlamydomonas reinhardtii chloroplast genome although it can be used to optimize genes into other hosts as well. The main tool in CUO, Moptimizer, introduces a semi-automatic way of gene optimization which provides more flexibility and accuracy during... -
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MoonPlanner
Moon calendar: shows moon's phase, signs and relatives plant's part
MoonPlanner is a Java calendar that allow to view moon's phases, moon's signs (constellations in which the moon is), and show the part of the plant corresponding to each sign (flower, fruit, leaf or root). For every calendar's day the user can attach notes (that are stored in a persistent database). At the startup the program will remind you if there will be notes for current day. Timezones and localizations (En, IT) are supported by the application. This calendar is usable between 1900... -
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TextComparer
Small Java program to compare two texts
Small Java program to compare two texts, originally designed to be used to find quotations in a Byzantine anthology. It can quite likely be used to detect plagiarism between two texts as well Graphical interface which allows easy navigation between corresponding parts in the two different texts. Uses the http://software.jessies.org/salma-hayek/ Java TextArea for this. Probably very much can be done to improve this program and the algorithm which it uses. -
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Javamony
A Student's Approach to the Phylogenetic Problem
Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve... -
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DynamiCoS is a framework to support user-centric service composition. It uses semantic web techniques to describe and discover services, which then are used in compositions that aim at satisfying user objectives. The current version is still an alpha version. Further developments are to be released soon.
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Modern MATLAB-based modelling software for 13C metabolic flux analysis (MFA). Support available in Google group (https://groups.google.com/d/forum/13cmfa-openflux).
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Cantharella
Pharmacochemical database of natural substances
The information system (IS) “Cantharella: Pharmacochemical database of natural substances” share and sustain pharmacochemical data of all organisms collected for the study of their natural substances, with a controlled access via internet. -
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ProSym
Software package that facilitates traffic simulation
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Starlink is a software framework which uses high-level models to describe protocols in order to generate an interoperability solution between protocol pairs. This includes dynamic generation of message composers and parsers. Starlink is a direct collaboration between Lancaster University and the University of Bordeaux. The contributions of Lancaster are carried out under the EU CONNECT project (http://www.connect-forever.eu)
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ScreeningAssistant 2 is a modular software dedicated to perform various simple and advanced chemoinformatics analysis around chemical libraries.
