Search Results for "gnu science" - Page 31
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Showing 3193 open source projects for "gnu science"
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quadGT
Software package for the joint genotyping
quadGT is a software package for the joint genotyping of two parents, child’s normal genome and child’s tumor genome based on sequencing reads aligned to a reference genome. -
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iAccess is a trust negotiation-based authorization service. It provides entities with the right to protect their own credentials and negotiate with remote (unknown) servers access to resources. iAccess works with X.509 and SAML standards.
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JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks...
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A light-weight group communication system/library of distributed algorithms implementations for agreement problems (e.g., Consensus, Unreliable Leader Election and Atomic Broadcast).
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ME_DSS
Microemulsion Decision Support System
This application allow user to predict microemulsion region based on algorithm consisted of artificial neural networks and random forests. Those techniques combined create Decision Support System. Application was created as a part of project K/DSC/000033 subsidy for young researchers from Polish Ministry of Higher Education. -
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Autmated Peptide Screening
Screening peptides for MHC and/or MHC-T cell receptor affinity
Modified version of AutoGrow, autogrow.ucsd.edu/ , with a mutation script added in the class files, and a global change of the defined mutation point from Hydrogen atoms to Calphas, to allow placement of Amino Acids. Deposited are 3 versions, used for my PhD Thesis. These allow for mutation of short 2-15 amino acid peptides, and associated screening of these using AutoDock or AutoDock Vina, allowing for 8 CPU systems to screen 10K peptides a day or 1-2K with flexible residues added in. A... -
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Jbookshelf
Jbookshelf is a portable library/video-library/collection manager!
Jbookshelf is a Bookcase and a book/video/collection or even warehouse manager; it can tracks any changes and shows the aspect of your libraries. It is portable, try to install it on a usb stick! It need only the Java runtime environment(JRE). Follow it on Facebook or G+ ! -
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TreeGrOSS Forest Growth Simulation
Software for modelling tree growth
Tree Growth Open Source Software is a Java based version of the forest growth simulator for north west Germany BWINPro. -
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Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.
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The term "question-answer paradigm" (QAP) is used in psycho-linguistics to refer to a familiar mode of human discourse. QAParadigm facilitates a common QAP experiment that involves a visual display, then a verbal question about the display.
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VSMOExp
Ontologies, which are made up by standardized and defined controlled
Ontologies, which are made up by standardized and defined controlled vocabulary terms and their inter-relationships, are comprehensive and readily searchable repositories for knowledge in a given domain -
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Multiagentsystem Ellipsis
Modular, agent-oriented and extendable agent toolkit.
Ellipsis is a modular, agent-oriented, and extendable toolkit to execute stationary and mobile software agents written in the Java programming language. Ellipsis uses the standard application server JBoss (version 4.2.3 GA) without any modifications. In contrast to existing mobile agent toolkits, Ellipsis has an agent- and message-oriented architecture. Ellipsis is built on top of the JMX architecture. Core Ellipsis components are implemented as MBeans which provides for basic ser-vices... -
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mesoFON
mesoFON is an individual-based mangrove forest model, a KiWi extension
mesoFON is an individual-based mangrove forest model. It is a Java implementation of the KiWi model done with RePast Simphony. It contains several new features: (1) You can add up to 10 species via the GUI. However, in principle, the number of species to be included programmatically is unlimited. (2) You can use a variety of growth functions via typing them in as a string on the GUI. (3) The model is transparent, sinc it comes with the Eclipse workbench of RePast. -
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The FAKE GAME tool uses natural evolution to evolve Data Mining models. It incorporates several preprocessing, optimization and visualization methods aimed to streamline the Knowledge Discovery process. Knowledge Extraction from data is being automated!
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MionChrom
Signal processing for chromatography
MionChrom interprets ASCII data from GC-C-IRMS systems, plots it, identifies peaks and autointegrates the results. The user can manually integrate peaks with different tools. The results is reported in *.XLS, *.TXT and *.PNG. ------------------------------------------------------ MionChrom is soon to be replaced by MionMass which isn't a open sourced project. -
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Open Rocket Toolkit
Simulation of historical and contemporary launch vehicles
ORT is a tool for modelling and flying launch vehicles of arbitrary size and complexity. Unlike OpenRocket, it does not focus on amateur rockets but on real-world launch vehicles. The bundle includes a graphical design tool with an integrated simulation engine for rocket launches. Also included in the bundle is a playback application and a headless driver for logging simulations into spreadsheets. ORT integrates JME3 for 3D rendering. -
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ABC-DynF
Adaptive Bayesian Classifier with Dynamic Features
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Transliterator between any Language files - Map Fonts, Create Encoding Scheme, Input Phonetic, Indian, Roman, Tamil, Hindi, English, French, German, Spanish or Any World Language Keyboard. Ex: [Phonetic Input]-[Any World Language Output] or ViceVersa.
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Simured is a multicomputer network simulation whith visual interface to see packet movement on the network. It is multi platform and there are versions in Java and C++.
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The Fluxion framework is a prototype data integration system using Semantic Web technologies.
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Java Evolutionary Computation Library
As of 2012-12-18, this project may now be found at Google Code.
As of 2012-12-18, this project may now be found at http://http://code.google.com/p/paba JECO is a Evolutionary Computation Library deveoloped in Java. It includes a variety of evolutionary optimization techniques such as genetic algorithm, genetic programming, evolutionary mapping methods, particle swarm optimization, ant colonies, etc. -
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AdPreqFr4SL
Adaptive Prequential Learning Framework
The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we... -
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TreeLiker
TreeLiker is a collection of fast algorithms for working with complex
TreeLiker is a collection of fast algorithms for working with complex structured data in relational form. The data can, for example, describe large organic molecules such as proteins or groups of individuals such as social networks or predator-prey networks etc. The algorithms included in TreeLiker are unique in that, in principle, they are able to search given sets of relational patterns exhaustively, thus guaranteeing that if some good pattern capturing an important feature of the problem...
