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The SPASE Registry Services is a metadata sharing system for Virtual Observatories. It is a collection of servlets that utilize SPASE compliant resource descriptions to provide access to both the metadata and data.
This projects has the intent to take any file that has a header and any number of lines, take out the blank lines, the carriage return and the line feed, given as delimitation the "project number" format and generates a new clean file.
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NMRShiftDB is an open-source, open-access, open-submission, open-content web database for chemical structures and their nuclear magnetic resonance data.
PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.
WSRF-compliant tools and services for data mining in grid computing environments, based on: Globus Toolkit 4, Condor and Triana workflow system. Learn more at: http://www.datamininggrid.org Copyright (c) 2008 DataMiningGrid Consortium.
Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
cy2reposition: Cytoscape 2 plugin for layout reuse
CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.
This project migrated to github
https://github.com/matthiaskoenig/cy2reposition
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To help math students visualize the prufer code and/or discover anything new about the prufer code not already present. Examples and live applet on webiste.
Seems to be closely related to Cellular automaton, except this creates a complex pattern from a mathematical function you input. See website for examples/live applets. This program makes use of an old GPL version of the JEP equation parser.
NG4J - 'Named Graphs API for Jena' is an extension to the Jena Semantic Web framework for parsing, manipulating and serializing sets of Named Graphs. For details about Named Graphs see http://www.w3.org/2004/03/trix/
Global Consciousness Project uses hardware "random" number generators and finds patterns between that and major world events. This Java applet will run on their webpage and translate that data to music-like audio. Or for general audio synthesizing.
Blogspread is an open platform for the developmend of applications that analyze data from websites like blogs and forums. Blogspread is jointly developed by the University of Mannheim, Germany, the UFPE, Recife, Brasil and the UFAL, Maceio, Brasil.
Agent inter-platform mobility service for the well-known JADE agent platform. This service allows software agents to move from one execution platform to the next, carrying their own data and state, and resuming their execution upon arrival.
Java IO Extension is a open source project which extends java IO package by providing a java class library to access IO system in a local area network Developers can easily use IO Extension just like using java IO API to access a remote IO system
JUNG provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network.
New version now available on GitHub: https://github.com/jrtom/jung/releases/tag/jung-2.1
Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
SLEDRIDE: Simplified Learning about Expression Data Running in a Desktop Environment. To provide a general workbench for pipe-lining microarray gene expression data from supervised learning results into unsupervised learning methods.
GEEP (Group Experiment Environment Project) is a research project focused on emergent group behavior. A suite of games accessible through a common Web interface allow visitors to compete against each other, providing anonymous data for later analysis.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates...