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MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).
The Handwritten project aims to provide software for open distribution of handwritten notes. A rudimentary datastructure containg strokes made by writing devices as for example palm computers, digital pens, etc, is implemented in both Java and C.
SAM Jr provides real-time analysis of Snort data. SAM Jr is written in Java and should run anywhere a modern JVM is available. SAM Jr will be extendable via plugins so that custom actions can be written easily.
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TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated
Celerity, an open-source, Java based data-flow architecture that provides high performance with fine data granuality. Celerity offers a module based programming environment, which can parrellelize across processors, machines and architectures.
LMS Tools is a set of tools and libraries for administrators and users of learning management systems to perform, for example, portal integration, LMS management or usage dataanalysis.
MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.
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FramerD is a distributed semi-structured object database originally developed at MIT. It provides an internationalized Scheme-based scripting language, built-in text analysis tools, and special support for web scripting.
GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
A mechanism for identifying, acquiring, transforming, and serving data from multiple geographically diverse, heterogeneous data sets from a common data portal. This work is funded by a NASA Advanced Information Systems Technology (AIST) grant.
A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.
Development of a multi platform application designed to allow the web access flow of any kind of data but keep the things simple, customizable and secure.
The MP4Free project provides a simulation, analysis and exploration platform for multi-processor system-on-chip applications at variable level of abstraction, providing also a comprehensive component library.
OpenJogBlog is a tool for blogging your jogging activities. You can record data on your runs, routes, and equipment, and keep track of your progress using built-in graphical analysis tools.
A Java based, command-line analysis tool for checking the conformance of data streams to the formal definition they are supposed to adhere. The formal definition itself should comply to RFC 2234 Augmented BNF for Syntax Specifications: ABNF or ASN.1
JavaMatch is an engine that can search inside a runtime Java data structures, and look for objects that best match the criteria that you specify. The extensive query mechanism allows for highly customizable tuning of your match queries.
Pattern recognition system written in Java.
Provide statistical informations about satellite and medical imagery; and also recognize symbols in a gaussian blur.
WordFreak is a java-based linguistic annotation tool designed to
support human, and automatic annotation of linguistic data as well as
employ active-learning for human correction of automatically annotated
data.
bitHull is a Simple unstructured data store-and-share mechanism. It is part experimental graph-based task/note/idea management system and part data aggregator.
Graphl is a generic graph visualization and manipulation tool written in Java. Graphl reads and writes RDF files, visualizes them in a flexible and customizeable way and allows users to edit them intuitively. Please see project homepage for more info...