Search Results for "throughput" - Page 3

The goal of this project is to combine different sources of information as well as methods to help in the process of gap closing / genome finishing in high throughput sequencing.

FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.

...INTRODUCTION --------------------------------------------- JdonFramework is a java framework to build your Domain Driven Design + CQRS + EventSource applications with asynchronous concurrency and higher throughput. 2. GETTING STARTED ------------------ In the "example" directory there are several examples for web application. You can run runTest.bat in this directory to see how to play JdonFramework in Application. In the "doc" directory there are all documents about how to use. Source Project : https://github.com/banq/jdonframework

Transcription Factor Analysis using SELEX with High-Throughput Sequencing (TFAST) is software developed by the Mobley lab at the University of Michigan designed to assist with transcription factor binding site discovery using data generated from aptamer-free SELEX-seq (afSELEX-seq).

This project contains a collection of RMI socket factories -- for instance gzip-encoded data sent over the wire, NIO-based communication etc.

...See here: https://github.com/ziplet/ziplet A J2EE servlet filter which compresses data written to the response. It supports several algorithms (gzip, deflate, etc.) and emphasizes minimal memory usage and high throughput. Also provides detailed performance stats. Feel free to fork pjl-comp-filter on Github: https://github.com/ziplet/ziplet

...Using GWT Uploader allows for enhanced file upload dialogs (multiple uploads, drag and drop, queues, parallel streams, etc.) and interactive interfaces (upload progress indicators, real-time throughput display, etc.) within GWT applications using pure Java code that provides a consistent experience across all browsers. If the browser is capable of handling file uploads using a modern HTML5 approach, the upload is handled using pure DOM elements and Javascript events. In the case that the browser does not support the modern approach (most notably IE 9 and earlier), the GWT Uploader component instead transparently handles the uploads via the Flash-based SWFUpload library.

...Wired, old wireless and new wireless are already supported but jTrcezer was developed in order to be easy for users to make changes or/and add new trace formats. The final results of the analyzing process are 2D charts for throughput,load,jitter,sent-forwarded-dropped packets and endtoend delay. Also jTrcezer support two different modes for these charts, As-Is and Time Average mode. This application uses jFreechart 1.0.13 library

A portable testing tool to validate the configuration of XA and two-phase commit for Java EE 6 Containers. The tool permits the stress-testing, performance characterization and correct transaction semantics of distributed transactions across Three XA resource managers by Exception Injection. The thin-client can be run from the command-line or inside the IDE. The server side component includes EJB packaging and some simple Web servlet support for retrieving diagnostic and performance data...

Screensaver is a Lab Information Management System (LIMS) for high-throughput screening of small molecule and RNAi biological assays. It is a Java/JSF/Hibernate/Spring web application that is actively being developed and used at Harvard Medical School. Note: The Screensaver project has moved to GitHub at https://github.com/hmsiccbl/screensaver.

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface.

Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.

SyMBA is a Data Archive and Integrator that is based on the Functional Genomics Object Model (http://fuge.sf.net) and which archives, stores, and retrieves raw high-throughput data. See http://symba.sf.net and http://www.cisban.ac.uk

SRMA is a post-alignment micro re-aligner for next-generation high throughput sequencing data.

iMethy for investigation and visualization of DNA methylation by high-throughput bisulfite sequencing

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. ...

A simple intelligent cache for java. Simple to use, intelligent enough to learn by itself for best throughput. Exploit the 80/20 rule, 80% of time 20% of data is used. Can be used as a wrapper around other caching solutions, like ehcache, jcache etc.

Extensible framework that enables productive design, analysis, and execution of arbitrary-sized neural-networks or system on a distributed, scalable, high-throughput runtime platform. Enables synapse-oriented-programming.

The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.

ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).

The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.

Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f

ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences

Raindrop is a Java based framework based on SEDA (Staged Event Driven Architecture) principles. It focuses on providing highly concurrent server side throughput by managing and controlling Thread usage and concurrency primitives.

Project MOVED to Codehaus New location is http://esper.codehaus.org The Esper project aims to provide a general-purpose event processing facility in Java for complex event processing of real-time, high throughput data streams.