Search Results for "research" - Page 24
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Showing 4992 open source projects for "research"
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The Rope Java Virtual Machine implements the Rope model which is a novel thread level speculative execution model called Rushing Object Parallel Environment. This is a research project aimed at exploiting parallelism in traditional object oriented programs.
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SeqPig
Use Apache Pig to process your large sequencing datasets!
SeqPig is a library for Apache Pig for the distributed analysis of large sequencing datasets. It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output. For more information see the manual at http://seqpig.sourceforge.net/ -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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BlueTermFX
Test your Arduino/BlueTooth-based components.
BlueTermFX is a small application that allows you to test your Arduino/BlueTooth-based components. It is inpired in the Android BlueTerm application. -
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Projects and applications developed from the lab of Yuval Kluger at the Pathology department at Yale
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The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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jPrediction
Open project ternary classifier of the machine learning
Open project ternary classifier of the machine learning -
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REDD Abacus SP
a land use planning tool for climate change research
**REDD Abacus SP** is a public domain software developed by the [World Agroforestry Centre (ICRAF)](http://www.worldagroforestry.org/sea) to: * Estimate emission from land use and land cover changes allowing for dynamic heterogeneity of soil types, elevations, climate and other biophysical characteristics in the landscapes * Analyze trade-offs between emissions and financial gain (opportunity cost analysis) and produce abatement cost curves Project ex-ante emissions and financial gain... -
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G4LTL-ST
Generating PLC programs from formal specifications
G4LTL-ST is a standalone tool and a Java library for automatically generating industrial control software (supporting IEC-61131-3 Structure Text) from LTL or extended logic specifications. See Tutorial.txt inside the package for step-by-step instructions. For technical demails, see CAV'14 paper "G4LTL-ST: Automatic Generation of PLC Programs". The old version (G4LTL; under BSD license) is available under file\arxiv. -
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JReliability allows to derive several reliability-related measures like Mean-Time-To-Failure (MTTF) or Mission-Time (MT) of complex systems that are modeled using Boolean functions, efficiently encoded in Binary Decision Diagrams (BDDs).
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BioDWH is a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. It provides up-to-date integrated knowledge, platform and database independence.
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The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).
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OpenCCG, the OpenNLP CCG Library, is a collection of natural language processing components and tools which provide support for parsing and realization with Combinatory Categorial Grammar (CCG).
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YADS
Yet Another DPWS Stack, a WS4D JMEDS fork (discontinued)
Note: This project has been discontinued due to the lack of quality of the original project's code base. I implemented a new DPWS stack from scratch for other projects, which was less work... YADS (Yet Another DPWS Stack) is a fork of the WS4D JMEDS webservice stack. YADS tries to integrate more standard Java SE features (type-safe template containers, concurrency, logging and modern Java language features) and high level HTTP components using non-blocking connections. YADS depends on... -
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Penguin Nest Picture Analyser
Penguin Nest Camera Analyser - program for aiding the counting of peng
Penguin Nest Camera Analyser - program for aiding the counting of penguins in images created by automated nest monitoring cameras. -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Xtraitj
Pure Trait-based Programming on the Java Platform
Xtraitj is a programming language for pure trait-based programming. It is completely compatible and interoperable with the JAVA platform without reducing the flexibility of traits. Xtraitj is integrated in Eclipse (editor with all the standard tooling) and JDT. It is implemented in Xtext, relying also on Xbase. -
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing,... -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can do together. The physics and vision algorithm is half working in version 0.3.0. The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. ... -
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JCLAL
A Java Class Library for Active Learning
...The full citation is: Oscar Reyes, Eduardo Pérez, María del Carmen Rodríguez-Hernández, Habib M. Fardoun, Sebastián Ventura. JCLAL: A Java Framework for Active Learning. Journal of Machine Learning Research, 17(95):1-5, 2016.
