Search Results for "gnu science" - Page 23
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Showing 3193 open source projects for "gnu science"
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Ballistica
Software Defined Scope System
This is an Open Source adaptation of the "Smart Rifle" or "Software Defined Scope System" (SDSS). Open source operating systems helped advance PC technology, making it available for everybody. Ballistica aims to be the "Linux of Smart Rifles": free and open source. The only challenge is the hardware, which must be fabricated by the user, or by any intrepid makers out there. -
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO,... -
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SetFon focus is an interface web based for Praat resources (www.praat.org) wich focus speech sound annalysis; it is a gerent program for acoustic analysis PHP/Mysql based. Developed with the framework SIMP.
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A Java web application to support all phases of the organization of scientific conferences from the submission of papers to the production of badges for participants. Corga currently ships with Hypersonic SQL, but can also run on MS SQL Server and MySQL.
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OpenCarto
Spatial data transformation, multi-scale mapping, vector web mapping
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LARS (Lightning Assessment of Risk for a Structure). LARS is a simple tool for the lightning assessment of risk for a structure, according to standard IEC 62305-2, second edition.
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Java application for image abstraction and stylization. The project implements a method for converting an image into a stylized image. The method includes a lot of image manipulations, conversions to different color spaces, filters, edge detection etc.
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javaGeom
A geometry library for Java
A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements. Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom Please update bookmarks! -
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Euclide is a dynamic geometry application written in Java. It allows creation of geometric shapes (lines, points, circles, conics...) and transforms (rotation, symmetry...), which depend each other. Moving a shape will also move shapes dependent on it.
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PARUS
Dataflow parallel programming language for clusters
PARUS is a data-flow parallel programming language that allows to build parallel programs for clusters and MPP multiprocessors. The data-flow graph is automatically converted to the C++/MPI source and linked with the libparus runtime library. Also there are available tools for benchmarking cluster interconnect and visualize it. -
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Urban is a software capable of procedurally creating 3d urban environments. It's based on a multi-agent system where each agent is responsible for one type of urban object. This means the system is highly modular and can easily be extended.
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Proteus
Proteus is an interactive Laboratory Journal for Gel-based Proteomics
Proteus is an interactive Laboratory Journal for Gel-based Proteomics. It features integration with the Delta2D software for peak import and annotation export. -
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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MGM GridComputing
Cross-platform grid computing solution
MGM GridComputing is a cross-platform solution to distribute time-thirsty tasks such as number crunching to a grid of connected clients. -
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TrafficModeller is an open-source, graphical user interface (GUI) tool for the rapid high-level modeling and generation of vehicular traffic. TrafficModeler supports a variety of traffic definition models representing a wide range of traffic patterns
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eubirdb is a bird(watchers) DB for name translation (scientific,it,en,fr,de,sp,nl) and retrieval, wants to be a base for birdwatchers (and ornithologists) software&data (checklist,img,...). Currently for EU(ring) aims to worldwideness. See forums for mor
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FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
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Docear
An Academic Literature Suite
Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology... -
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Impact is an explicit Finite Element Program Suite which simulates dynamic impact events. It has a range of elements, contact handling and different material laws. Models can be created, solved and analyzed with the included pre- and postprocessor. Impact is based on an Explicit Time stepping algorithm. These kind of codes are used to simulate dynamic phenomena such as car crashes and similar, usually involving large deformations.
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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JBernstein
JBernstein: Exploration techniques for non-linear constraint checking
JBernstein is a tool implemented in Java that enables to check whether a polynomial constraint holds for all variables within their domain. It is mainly used in the verification or synthesis of cyber-physical systems where the system model is nonlinear. The tool also supports specifications in assume-guarantee style. The underlying algorithm is based on a translation to Bernstein polynomials, and several optimization techniques are implemented to ensure efficiency. Concerning performance,... -
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ontocomp
OntoComP is a Protégé 4 plug-in for completing OWL ontologies
OntoComP is a Protégé 4 plug-in for completing OWL ontologies. It enables the user to check whether an OWL ontology contains "all relevant information" about the application domain, and extends the ontology appropriately if this is not the case. It achieves this by asking the user questions of the form "are instances of classes C1 and C2 also instances of class C3?". If the user confirms such a question, then a new axiom of the application domain that does not follow from the ontology has... -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.
