Search Results for "informatics" - Page 21
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Showing 916 open source projects for "informatics"
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ArrayPlex integrates various forms of microarray data from diverse annotation and primary data sources. It provides a programmatic framework (API set) for collaborative development and deploys as easy to maintain client-server architecture.
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The Molwind project aims at developing Open Source software to visualize relationships among molecular entities such as chemical structures on the basis of NASA WorldWind. Different levels of complexity get visible by zooming in areas of interest.
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A system based on the multiagent approach, to help the biologists with the manual annotation task on genome sequencing projects
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h2:www is an easily extendable online interface for bioinformatical command-line tools, providing convenient project-oriented working facilities for multiple users.
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GAME stays for Generic Architecture based on Multiple Experts. Its main purpose is to make easy prototyping, test and release of prediction systems. Released by IASC group, university of Cagliari
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D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.
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A wrapper that makes the UMLS MetaMap tool (http://mmtx.nlm.nih.gov/) available as an UIMA analysis engine.
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Moara is a biological text mining tool and consists of a Java library and some auxiliary MySQL databases for gene/protein training and extraction of mentions and its further normalization and disambiguation.
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Opensource software projects for genetics and genomics from Sage Bionetworks.
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Care4G is a web-based software, as forking of the most famous care2x, it will be a complete HIS for the II Millennium...
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Este projeto objetiva a criação de um Toolbox para utilização de algoritmos de Computação Bioinspirada. O Toobox oferece uma vasta coleção de algoritmos de ferramentas para o projeto de Algoritmos Genéticos e Redes Neurais.
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DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.
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Repository for the UCLA Laboratory of Neuro Imaging (LONI) Pipeline Globus Plugin Development
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SnoopCGH is a java desktop application for visualising and exploring comparative genomic hybridization (CGH) data.
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This project develops a web-based (JSP) Fuzzy Rule-Based Expert System for analyzing ECG (electro cardio gram) signals & diagnosing Tachi-Arrhythmias. Proj. main blocks: inference engine, knowledgebase, KB editor, explanation, and feature extraction.
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cy2reposition
cy2reposition: Cytoscape 2 plugin for layout reuse
CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects. This project migrated to github https://github.com/matthiaskoenig/cy2reposition -
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PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
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PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
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Program described in the paper: MUDE: A new approach for optimizing sensitivity in the target-decoy search strategy for large-scale peptide/protein identification, 2010. By Cerqueira, Fabio; Graber, Armin; Schwikowski, Benno; Baumgartner, Christian.
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Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
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TaxonFinder is an application that annotates taxon found in literature. The application harnesses a hybrid algorithm that is necessarily a combination of morphological analysis, dictionary lookup and Levenstein Distance algorithm.
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A Cytoscape Plug-in Project to Predict transcription states of genes in a Biological Network based on a Bayes Network model
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HealthAgents is an open source web-based distributed decision support system (DSS) which provides hospitals and organisations with a reliable tool to aid in the diagnosis of brain tumours and their prognosis aiming to avoid invasive surgical procedures
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OpenDMAP (Open Source Direct Memory Access Parser) is a natural language processing (text mining) application: a semantic parser for information extraction.