Search Results for "gnu science" - Page 17
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Showing 3193 open source projects for "gnu science"
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Argunet
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server. -
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kovacs.util (Java numerical classes)
!!! moved to jnum subproject under crush-software !!!
This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here... -
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Sequencia
Protein Primary Sequnece Analysis
The current work is focused on the Software Development of an Offline Tool for “PRIMARY-SEQUENCE ANALYSIS” with JAVA and open source resources. SEQUENCIA Tool is an offline Tool of Primary Sequence Analysis, which is quite prevalent Topic for Researchers all over the world. Sequence Name, Sequence Length, Absorbance, Net charge, Iso electric charge, Amino acid composition, Amino acid classification, Aliphatic Index, Instability Index, Average Hydropathy etc are the Primary Sequence Analysis... -
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The aim of the project VIF is to create a next generation discussion forum, i.e. a forum with extended functionality that makes it especially suitable to discuss complex and controversial questions. Thus, VIF can be used as 'knowledge factory'.
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Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain. The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative. The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.
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FPF_predict
Fine Particle Fraction (FPF) predictor
Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN -
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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GUAJE FUZZY
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying... -
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Zettelkasten 3
Elektronischer Zettelkasten nach Niklas Luhmann
Auf diesen Seiten finden Sie einen elektronischen Zettelkasten für Ihren Computer, der sich am Arbeitsprinzip des Zettelkastens von Niklas Luhmann orientiert. Mit Hilfe dieses Programms können Sie die tägliche Arbeit mit (wissenschaftlichen) Texten erleichtern und wesentlich effektiver gestalten. Sowohl das Verwalten wichtiger Textstellen, Exzerpte und Zitate als auch die anschließende Verwendung dieser Textsammlung zwecks Textproduktion werden durch den Zettelkasten erheblich vereinfacht. -
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Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.
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Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
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memesa-tools
A collection of tools used in the enumeration of solution spaces
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function. -
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Java Application Framework For All
JAFFA is a Rich Web 2.0 POJO based Event-Driven SOA framework
An Enterprise Focused Java Framework For Rapid Application Development. JAFFA is a Java web application development stack, build around Web 2.0 technologies (ExtJS, DWR, JAWR) with an extensive service architecture, meta-data layer and rules engine (based on JBoss AOP and Drools). It provides an event driven SOA infrastructure with advanced scheduling and queue sub-systems -
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Rapidminer Onomastics Extension
Extract Gender and Origin from Personal Names
Guessing the gender of name is not as simple as it seems: - Andrea is a male name in Italy, a female name in the US. Laurence is a female name in France and a male name in the UK or in the US - name demographics evolve, some names are genderless - in Chinese or Korean, guessing the gender is almost impossible in Latin script, truly difficult even with the original script - in most cultures, the gender is 'encoded' in the first name, in others it is encoded in the last name as well (for... -
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oasis-genomics
Oasis Genomics cancer omics integration portal
OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets. -
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JConvert is a free unit conversion program that has a friendly user interface and can also be used with external applications. Conversions can be modified and/or added easily. Supports multiple languages. Downloads and runs in seconds! Try it now.
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Fingrams Generator
Stand-alone software tool able to generate and visualize fingrams.
Stand-alone software tool able to generate and visualize fingrams. It handles fuzzy systems designed by whatever fuzzy modeling tool. This tool takes as input a standard configuration file easy to be generated from a fuzzy system. Currently, Fingrams can be generated for classification, regression fuzzy rule based systems and fuzzy association rules. GUAJE [http://www.softcomputing.es/guaje], and KEEL [http://www.keel.es] are able to automatically produce the required input file. -
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This is a parser in Java for Lisp S-expressions. An S-expression or sexp (for symbolic expression) is a convention for representing data using parentheses.
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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S2O
Converting IBM SPSS files to CDISC ODM
This tool can be used to convert data collections based on IBM SPSS Statistics to the data standard for definition and exchange of clinical trials: CDISC ODM (Operational Data Model). Possible use-cases: - A project is running out of funding and scientific data collection should be performed in free available/open-source data capture systems - Advantages of reliable EDC systems like: Data security (role/right management), backup infrastructure, support of the entire clinical trial... -
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The Protein Similarity Network
Human protein similarity network used to predict drug safety.
This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do... -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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mathCollection is a java package representing a consistent and efficient extension to the Java Collection Framework of JDK 1.4. It offers different kinds of sets with mathematical, non-destructive functions.
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Human AI Net
a Human and Artificial Intelligence Network
We are going to teach eachother how to build AI and new kinds of game objects in this network using intuitive dragAndDrop. Its going to be a space for experimenting with fun and useful tools in new ways. Version 0.8.0 has some advanced components that will be working soon. The plan is a massively multiplayer space where we design, evolve, and play with game objects and do AI research together which controls those game objects along with directly playing the games. The main data format is,...
