This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.
Journal Management Systems (JMS) is a journal management and publishing software system. Available as open source, JMS assists with every stage of the refereed publishing process, from submissions to online publication. JMS seeks to improve the scholarly
This project consists of modifications to the i2b2 core project management cell in order to increase the security of the authentication information passed to the client. These changes are being considered for the next core release.
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Timba is an irregular surfaces calculus system by applying the method ‘Montecarlo’. Its goal is to calculate the growing of moles, spots and skin cancer of a patient.
The VIA Imaging Application (VIA) is an open-source Diagnostic Imaging Viewer based on open standards such as IHE, JPEG 2000 and JPIP, and DICOM. VIA is written in Java and is composes of a series of client-server applications.
OSTherapy is a database and analyse-tool for naturopathy and homeopathy. It includes repertories and diagnostical tools for diverse naturophatic therapies, creating the possibility to reference to the different therapy methods.
JisM is a multi-threads program allowing users to perform segmentation's tasks on a picture. Users could add new segmentation methods as JisM's plugins. Plugins can be written in Java or in Python.
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The i2b2 Center is developing a scalable informatics framework that will bridge clinical research data and the vast data banks arising from basic science research in order to better understand the genetic bases of complex diseases.
The Open Genome Analysis Platform (OGAP) provides an effectual analysis and visualization toolset for a variety of genome, proteomics, and associated data.
ArrayCGH DataBase is an effort to distribute Array CGH data between clinical and research groups. It will be platform independent, and will utilize MySQL as it's persistent storage mechanism. A web client may be implemented at some point.
This project is a simulation of the behavior of the human immonological system. It does not intend, in this very first moment, to be a complete simulation but it's going to try to simulate the most important part that is the adaptative response.
This application is used to track food calories and physical activity calories based on a data base of meals and exercises. The database can be personalized based on your lifestyle and habits.
jlpv is a Java Light PACS Viewer application useful for review series or images from DICOM data retrieved from the DCM4CHEE PACS system. It also uses ImageJ as a rendering engine or viewer. This project is in a early stage.
It is a sofware to admin al things about a sportive club, from the trainig to the economy. The first step will take care of individual sports: athletics and cycling. Later we will support team sports like football, basket, handball or rugby.
The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.
The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.
A new 3D Top-Down online survival action/strategy game for Code Orange Studios. Players must work together to survive on a space station overrun with failed medical experiments.