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This is a reference implementation of snoBAC, a Bayesian Classifier designed to predict box H/ACA snoRNAs in Caenorhabditis nematode genomes. For details of algorithm and data, see Wang and Ruvinsky (2009) RNA in press.
Identification of biological species via iterational process of giving an ordered set of questions to user. The order is defined by an optimization algorithm, trying to provide the most correct prediction about the questions to ask.
Toothfairy is a Java midlet for chatting on mobile devices via a Bluetooth connection. It creates a network of devices using a simple but powerful ad-hoc routing algorithm.
Lisn uses the JNI to interface with various media players(winamp/itunes) using either the COM interface or HWND calls. Allows intuitive interaction with the media players as well as a quasi heuristic algorithm for volume control(under development)
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ConTextKit is a Java-based implementation of Wendy Chapman's ConText algorithm for annotating the context of medical documents, specifically the negation, temporality, and experiencer.
AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
MCS is a tool that exploits the Monte Carlo method and, with a complex algorithm based on the PERT (Program Evaluation and Review Technique), it estimates a project's time.
MCS is a opensource project and it was devolped by Java Programming Language.
We propose a metabolic pathway drawing algorithm for reducing the number of edge crossings by considering the fact that metabolic pathway graph is scale-free network.
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The goal: to provide implementations of as many algorithms (sorting, searching, ...) and data structures (lists, trees, ...) as possible, accompanied by discussion of big O run time and memory limits and references to sources of further study.
G.A.V. (Graph Algorithm Visualizer) is a tool that visualizes algorithms from graph theory. A step-by-step visualization from each different algorithm allows the user to understand the particular algorithm very easily.
GAAF is a tool for analyzing Genetic Algorithms (GA for short). It allows to check the behavior of a particular GA resolving a particular problem so one can get empirical information to decide which GA best fits problem's conditions.
EMURA is a suite of Java applications that allows two users to send encrypted messages back and forth - as a chat. The encryption key is secure and generated using the Diffie-Hellman algorithm. Utilizes GNU-CRYPTO libraries
A Java package for pretty-printing a text by deciding where to introduce line-breaks and indentation. A Java implementation of Derek Oppen\'s pretty printing algorithm. It is _not_ a pretty printer for Java code, though it could be used to write one.
The implementation of Bee Hive @ Work algorithm that simulates the foraging behavior of honey bees in nature. The aim is to provide an extensible framework that can be used by researchers to simply create new applications of this algorithm.
MelodyBall generates a simulated array of soundmaking bars, on which a ball bounces and plays a melody (see www.melodyball.com). Need to fix Java/MIDI bugs and read MIDI files as source data for the algorithm to create alternate melodies.
a first work algorithm trials to implement a compromise between distributed and centralized version control system.part of research project,it's only a simulation. no real networking is implemented ,only virtual random signal are imaginary produced.
Shape is a molecular conformation prediction program. It uses a genetic algorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
Utility for translating language packs used in games into a different language. Supports over 50 games, with more games added through small plugins. Simple and easy-to-use interface, and totally free.
This is an implementation of Donald Knuth's Algorithm X ("dancing links"). This is primarily a sudoku generator and solver, though it can be used to solve other exact cover problems.
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
Quex is a one-click german-english english-german translator/dictionary written in Java. It contains more than 500.000 translations, synonyms and examples. It works offline and needs no installation. Just 3 mb filesize!