Search Results for "data analysis" - Page 10
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Showing 676 open source projects for "data analysis"
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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SNVer is a statistical tool for calling common and rare variants in analysis of pool or individual next-generation sequencing data.
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RDS Surveyor is an RDS/RBDS decoding, monitoring and analysis tool and library. It has migrated to GitHub: https://github.com/ChristopheJacquet/RdsSurveyor/
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xSonify
Java-based sonification data analysis
xSonify is a Java-based sonification data analysis prototype for displaying science data as sounds, with an emphasis on supporting visually-impaired researchers. Alternatives include Sonification Sandbox <http://sonify.psych.gatech.edu/research/>, MathTrax and Earth Plus <http://prime.jsc.nasa.gov/>, Sonifyer <http://www.sonifyer.org> and SoniPy <http://sourceforge.net/projects/sonipy/>. -
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OpenI plugin for Pentaho CE provides a simple and clean user interface to visualize data in OLAP cubes. It supports both direct Mondrian and xmla based connections like Microsoft SQL Server Analysis Services (SSAS), plus provides add-on features like Explore Cube Data, custom SQL for drillthrough data, publishing drillthrough data to external web services etc.
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Gurmi - Real time data aggregation
Real time data aggregation, analysis GUI Tool
Gurmi project is an aggregate of data analysis tools. Will collect and analyze data in real-time output from the various types of equipment that shows the various forms of visulization. Gurmi project goal of the data collection, analysis, output is easy to use. -
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
K-Surfer is a novel and unique software plugin for KNIME for the management and analysis of FreeSurfer brain dMRI data. K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. -
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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DSOL
DSOL: A Distributed Simulation Object Library implemented in Java
DSOL is a full featured multi-formalism, distributed simulation environment developed at Delft University of Technology (The Netherlands). DSOL has support for discrete event and for continuous modeling. Formalisms supported are event scheduling, DEVS, flow-based simulation, and continuous modeling through sets of differential equations. The first release was introduced at IEEE's Winter Simulation Conference in 2002. Since then, numerous papers and PhD dissertations have been developed, with... -
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ldi
Lucene Oracle Integration using Data Cartridge API
Lucene Domain Index is full integration of Lucene project running inside the Oracle database using Oracle JVM. The integration provides a transparent detection of row data changes and an SQL layer for doing search. -
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Cuttlefish aims to be a highly extensible visualization and analysis platform for all kinds of network data. IMPORTANT: The Cuttlefish project has been migrated to github: https://github.com/dev-cuttlefish/cuttlefish
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Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
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Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
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QuantComponents
Free Java components for Quantitative Finance and Algorithmic Trading
An open-source framework for financial time-series analysis and algorithmic trading, based on Java and OSGi, with an Eclipse front-end. * Highly modular: usable as plain java API, OSGi components, or integrated into Eclipse * Standalone or client-server architecture, depending on performance and reliability needs * Integrated with Interactive Brokers through IB Java API * Generic broker API, it can easily be extended to work with other brokers * It works with historical and/or realtime market data * Backtesting facility * Extensible SWT charting library -
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TOPS_CeMM
User Friendly Data Analysis Tool for Interaction Data
TOPS provides the benchtop scientist with a free toolset to analyze, filter and visualize data from functional genomic gene-gene and gene-drug interaction screens with a flexible interface to accommodate various different technologies and analysis algorithms in addition to those already provided here. -
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xBook
xBook is a framework for archaeological databases
xBook is a common framework for several archaeo-related database applications developed and published by Ludwig Maximilian University of Munich. All database applications that are based on the framework (called Books) provide the same basic technical features, but each application can be extended individually. Especially the Synchronisation and the User Rights Management are strong features that allow creating backups and sharing your data to collaborate with other users. The... -
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Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.
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Gpf4Med
Graph Processing Framework for Medical Information
Gpf4Med is a graph processing framework for clinical data, which can leverage from previously existing medical database and Cloud computing facilities to address large-scale studies. -
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NISA
Image Stack Analyzer
OpenCV powered image stack analyser for data extraction and preparation. Can be used in conjunction with nanocalcFX. You can get sample data at the NISA homepage. Currently in pre-alpha state. -
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Scertify - TechDebt Community
Benchmark code quality and measure Technical Debt of projects in Sonar
Scertify™ Refactoring Assessment is an open source component dedicated to development & QA teams that provides exclusive benchmark data on Software Quality. It automatically detects the portions of an application that can be refactored, gives valuable information on refactoring strategies, and costs. Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any... -
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Jlint
Static analyzer for Java bytecode
Jlint will check your Java code and find bugs, inconsistencies and synchronization problems by doing data flow analysis on the code and building the lock graph. Jlint is fast, easy to learn, and requires no changes in the class files to be checked. -
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jFox Journal
Trading journal for Currency,Stock,Commodity traders
jFox Trading Journal is software developed mainly for currency traders,it provides advanced data analysis to improve traders ability to reach higher profits and eliminate losses.jFox keeps your data in one place.To access or modify any of your data jFox provide simple user friendly GUI.By generating graphs and statistics automaticly,user only needs to provide his data to have full overview over his trades and trading performance. -
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SecStAnT
Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only... -
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
...This extracts a relevant structure for both documents (and thus avoids the over-training) which are then compared using the Vector-Space analysis to give a range of belonging of one document to another (and thus avoids the shortage of information). This method can be used to create the user-defined classes by merging texts of certain categories and then to calculate the relevant distances between the documents, but this is not necessary.
