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Annotation and enrichment of Next-Gen sequencing data
Note: This version requires additional SQLite database files. Contact the developers to obtain them.
Use http://www.integrativegenomics.org/ for the latest data and analyses.
GenomeRunner is a tool for automating genome exploration. It performs annotation and enrichment analyses of user-provided genomic regions (SNPs, ChIP-seq binding sites etc.) against >6,000 (human genome) epigenomic features available from the UCSC genome browser.
Input - any genome-wide data data in .bed...
Refal.NET - Versatile, Compact yet Powfull Text Transformer and Compiler-Writing System. Based on Refal.NET Virtual Machine (+Refal.NET Compiler), this RAD-tool might be used for rapid prototyping, decreasing up to 10 times development efforts.