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DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse...

The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage.

Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...

SIPeS - Site Identification from Paired-end Sequencing

This is a computer forensics useful tool written in bash script for Linux systems. It's fast and selective, you can retrieve all the files of the file type you choose with only one tool referenced, deleted and unallocated in very fast way.

A simple script to download all versions (or only the specified) of BOINC to the current directory.

The kernel network stack may behave not as expected, especially in the case of receiving packets. With Ianus it is possible to bypass the kernel network stack and to develop your own network stack in user space or other tools.

The aim of MIEX (Metadata and Information Extractor from small XML documents) is to create a wrapper for the Stanford Parser, to extract and store metadata (syntactic structures, relationships among words...) from simple XML documents.

These simple programs are for doing data reduction and then display of columns of tab delimited data. They are designed to be piped together so you can do multiple things at once. This means they typically read from stdin and output to stdout.

Recon-Calc is a source code feature location tool based on the Software Reconnaissance technique. It allows you to name features of your system and then, based on coverage profiles gathered, you can find where they are implemented in the source code.

Uechi APM Web is an APM (Application Performance Management) Open Source Server Performance Monitor written and developed in Java and C # for all Linux and Windows platforms. The Uechi.APM.Web offers a complete resource for unlimited monitoring servers in real time. Have full control of the CPU consumption, memory, disk and network traffic. Communication is done via TCP Protocol Socket connection. More information, please visit: http://uechi.com.br/uechi-apm-web-eng/