Search Results for "data science"

QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).

DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse...

The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage.

Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...

A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file...

A tool for autonomous and virtual topical data integration using the focused web-harvesting method.

A Folding@Home integrated monitoring environment, designed for Linux, *nix systems and Windows, which is intended to be easy-to-use and provide a flexible, customiseable and "user-friendly" environment for reviewing the status of active F@H clients.

These simple programs are for doing data reduction and then display of columns of tab delimited data. They are designed to be piped together so you can do multiple things at once. This means they typically read from stdin and output to stdout.

Benetech Human Rights Program Utility Library: Collection of utilities used by the Benetech Human Rights programming for processing human rights data in preparation for statistical analysis. Library handles DSV files, name canonicalization, binarray, et

WikiVis is a tool to analyze Wikipedia based on several aspects. The main objective is to visualize the conclusions of this examination, which focusses on the editing frequency and relevance of articles and categories as well as the activity of users.