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...Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution.
SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images.
For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific Instruments.
A related open-source project SPIEPy (https://pypi.python.org/pypi/SPIEPy/) is developing a python library to for automated SPM imaged enhancement. SPIEPy brings many SPIW algorithms to the Python user.
CDTB is a MATLAB toolbox which performs Community Detection
...The user can employ the functions from the MATLAB command line; or he can write his own code, incorporating the CDTB functions; or he can use the Graphical User Interface (GUI) which automates the community detection and includes some data visualization options.