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MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
ZATreeX is a data manager with two control panels. The difference with conventional data managers is its ability to manage any tree structured data:you just have to implment a java interface. It is also able to extend it functionality (another interface)
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a cross-platform application to decode, search, browse, view, print, and export TLG/PHI BetaCode texts. Project is currently being ported from wxWindows to Java. (For more info, see the project homepage at http://wxtlg.sourceforge.net)
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
Alpie implements lp2 [(LP)2, Fabio Ciravegna Univ. of Sheffield] and an extended version of it. The methods in this package can be used to test and verify grammars for different corporas.
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A rather simple java program for parsing plain text files (generally in large numbers), which should then offer frequency statistics of usage, graphs, full-text search and maybe something more.
This toolkit facilitates easier connections between stored data, intermediate data, and data presented to users in Java applications. The classes are abstracted as much as possible to allow wide use for various types of programs.
JNeuron is an analysis tool for multi-neuronal spike train analysis. The tool will allow scientists to organize their spike train data analysis into projects. The tool will implement standard spike train analysis algorithms and also datamining algorithms
DEAL (Domain Extraction ALgorithm) is an application for domain analysis. Its main purpose is to extract domain information from existing Java applications and to create different kinds of models from the extracted data, including domain-specific languages.
RunAsApproximator es un programa java multilenguaje que implementa algoritmos numéricos. Los datos de entrada son aquellos requeridos por cada algoritmo y los de salida son resultado final y los datos intermedios necesarios para alcanzar su resolución.