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MEASJ, the Multiply Extensible Architecture Simulator in Java, is a Framework for creating Simulations and Emulations of von Neumann architecture based systems.
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
MMOpenGraph is a set of JAVA-Classes to represent graphs within java. It can load and save graphs to serialized or text-based files and analyze graphs to find shortest paths.
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A Java package to read and manipulate graphs in the GXL (Graph eXchange Language) format, as well as providing a GXL graph editor. Note from admin: This project is discontinued, send me a message if you want to take over.
The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
MODVLO7 provides an environment for exploring harmonic prolongations in any piece of tonal music. It imports Scala files, and saves Scala files for future changes or study, and for rendering MIDI files in just intonation using Scala.
ZATreeX is a data manager with two control panels. The difference with conventional data managers is its ability to manage any tree structured data:you just have to implment a java interface. It is also able to extend it functionality (another interface)
Library made with the quantity/formatter pattern. (Currency/CurrencyFormat, Density/DensityFormat, Dimension/DimensionFormat, Distance/DistanceFormat, ElapsedTime/ElapsedTimeFormat, Temperature/TemperatureFormat, Volume/VolumeFormat, Weight/WeightFormat)
Kaph provides a portable (written in Java) method by which to display and guide users through multiple-subject research surveys. Configuration is handled via XML files. Support for a wide range of types of questions is provided.
Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
A Java modular system for inquiry people via internet or using PDA. The system lets analize the results via statistic methods and print reports and graphics.
Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.
a cross-platform application to decode, search, browse, view, print, and export TLG/PHI BetaCode texts. Project is currently being ported from wxWindows to Java. (For more info, see the project homepage at http://wxtlg.sourceforge.net)
A Java-based client-server architecture for processing network intrusion detection data. The server receives XML alerts from Snort sensors buffers them for review by clients. The console provides a real-time view of IDS activity.
GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work
SYFONE es un agente software capaz de realizar tareas descritas por un lenguaje de programación propio. Estas tareas van desde la extracción, al tratamiento de información que se encuentra en la red.