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The NITE XML Toolkit supports the creation, analysis, and browsing of annotated multimodal, text, or spoken language corpora, and represents both timing and rich linguistic structure. It contains libraries for developers and some end user tools.
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
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SPASE Model is a collection of tools for working with the structured data model information. Tools can convert the relational version of the data model into various expressions, including XSD, XMI and PDF documentation.
This project is a compilation of tools/libraries to help with tasks related to Text Analytics mainly in Java. These tools range from simple wrappers to sophisticated mining tasks that can improve the productivity of researchers and engineers.
DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.
Nevada is a tool for interactive visualization of dynamic networks. Unlike other dynamic network visualization tools it's focussing on visualizations preserving the user's mental-map. Import of Pajek files is supported.
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
T-Rex (Trainable Relation Extraction) is a highly configurable machine learning-based Information Extraction from Text framework, which includes tools for document classification, entity extraction and relation extraction.
LT4eL (Language Technology for e-Learning) develops a framework of multilingual language technology tools and semantic web techniques for improving the retrieval and the metadata annotation of learning material.
The aim of the project is to provide open source collection of algorithms in the field of spectroscopy: data handling and processing, modeling and artificial intelligence tools.
KNeTS (Knowledge Elicitation Tools) is a survey tool to create multi-agent models based on local knowledge using pattern analysis to identify rules that are iteratively validated with the informant. The final output is a knowledge-based multi-agent model
The Databionics ESOM Tools offer many data mining tasks using Emergent Self-Organizing Maps. Visualization, clustering, and classification of high-dimensional data using databionics principles can be performed interactively or automatically.
JTabler is for the simple table manager to utilize other programs, including many internet utilities, statistics tools, especially adapted for chemistry data such as SDF and MOL
hypKNOWsys aims at developing a Java-based workbench for knowledge discovery and knowledge management. Currently, hypKNOWsys has released two intermediate tools: DIAsDEM Workbench (text mining for semantic tagging) and WUMprep (Web mining pre-processing)
The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
Set of Ant filters that can be used to gather statistics from files or resources. It is mainly used for log files analysis. It allows to: - count inputs - count occurrences of each input - calculate average, max and min values of floats in input
A set of software components used to investigate and implement searching of music and audio. This covers content-based retrieval and meta-data based solutions, segmentation and content selection (summarisation) of audio and music (MIDI, MP3 and WAV).
MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
Vizumine helps the data analyst to extract information of the data. It creates association rules of a large set of items and provides tools to analize these rules.
The SrcML Framework allows converting Sourcecode to a XML representation on which tools can then be used to deduce statical data for analyzing and visualizing the initial source. It also provides easy ways to write programs which modify other programs.
Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
The Annotation Graph Schema API aims to aid developers in the creation and querying
of Annotation bases where the use of XML-based tools is needed. It is easily integratable with any persistent representation and has a flexible in-memory model.