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We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented.
Project files contain:
- simple code to hold/read/write data and perform sample processing.
- BioC-formatted corpora
- BioC tools that work with BioC corpora
BioC goals
- simplicity
- interoperability
- broad use
- reuse
There should be little investment required to learn to use a format or a software module to process that format. We are...
NEWS:
11-07-2013 A new version Virmid 1.1.0 has been uploaded.
08-29-2013 Virmid paper is now published in Genome Biology.
Kim S et al, "Virmid: accurate detection of somatic mutations with sample impurity inference", Genome Biology 2013, 14:R90
http://genomebiology.com/2013/14/8/R90/abstract
Virmid (Virtual Microdissection for SNP calling) is a Java based variant caller designed for disease-control matched samples. Virmid is also specialized for identifying potential within individual contamination where the disease sample cannot be purified enough. ...
A visualization of the fourier transform applied to sound data. Analyzes a time-domain sound sample using the Fourier Transform, and graphically displays the results and sound in real time. Attempts to audio into sheet music.
A complete suite of market research tools utilizing open standards and capable of running on multiple server and client platforms. Includes software for sample management, survey design, programming, data collection, tabulation, coding, weighting, etc