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Siafu simulates individual agents and their context, from home to city-wide scenarios. As a developer, you use the API to write your simulation for the purposes of data-set generation, test or visualization, optionally hooking it to your own application.
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
Regexp testing tool allows to apply group of regexps to huge arrays of data (millions or so) in order to investigate search or search/replacement possibilities of regexp group.
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library for capturing, storing and visualizing timeseries data
The JTimeSeries has moved to github
Please go to https://github.com/JTimeSeries/jtimeseries
The SourceForge copy has not been maintained since Sep 2012
A java library to assist with capturing and storing timeseries data/metrics. Provides facilities to publish timeseries data across a network, a lightweight server to persist series data, and client user interface components for real time visualization
JGraph is the most powerful, lightweight, feature-rich, and thoroughly documented open-source graph component available for Java. See the project homepage at www.jgraph.com for information and downloads.
PIAF (Prototype Image Applications Fast) is a prototyping tool for helping development of image processing algorithms. Based on a Qt GUI, it can display and process several live video inputs or still images with a plugins based architecture.
PyramidWorkshop is an image-compression System based upon the scientific work of John Robinson (inventor of BTPC) about image-compression with adaptive linear predictors and is in average more efficient than PNG/JPEG2000.
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
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GmanDA is a GPL software for performing qualitative data analysis on mailing-lists and mboxes. It was developed to ease the work with large scale mailing-list archives taken from Gmane.org
Blogspread is an open platform for the developmend of applications that analyze data from websites like blogs and forums. Blogspread is jointly developed by the University of Mannheim, Germany, the UFPE, Recife, Brasil and the UFAL, Maceio, Brasil.
SLEDRIDE: Simplified Learning about Expression Data Running in a Desktop Environment. To provide a general workbench for pipe-lining microarray gene expression data from supervised learning results into unsupervised learning methods.
AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
This research project seeks to use compiler techniques to perform an attribute-based data-flow analysis on (MOF/UML)models allowing for a syntax-driven validation of a model's static semantics as well as an abstract interpretation of i dynamic behavior.
3D Imaging for Civil Engineering. 3D imaging system for ground penetrating radar (GPR, georadar) data applied to civil engineering (roads, railways, etc.). Currently planning support for 3DR (www.3d-radar.com) and HDF5 (www.hdfgroup.org) formats.
Helps compatibility with Vernier's Graphical Analysis and Logger Pro software. Includes a converter to extract important data out of Vernier .ga3 and .cmbl data files, and spreadsheet to analyze the data with tables, graphs, and curve fitting.
The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
Nevada is a tool for interactive visualization of dynamic networks. Unlike other dynamic network visualization tools it's focussing on visualizations preserving the user's mental-map. Import of Pajek files is supported.