Search Results for "alpha" - Page 2
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Showing 412 open source projects for "alpha"
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ACCORD is a C library for composition of scanning electron or helium-ion microscope images with correction of drift. It produces significantly more accurate images than the traditional imaging techniques and also provides drift trajectories.
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The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
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OCaml interface to FFTW3 -- the Fastest Fourier Transform in the West! (http://www.fftw.org/). The code is developed at https://github.com/Chris00/fftw-ocaml
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Virmid
Virtual Microdissection for SNP calling
...While the SNP calling rate is severely compromised with this heterogeneity, Virmid can uncover SNPs with low allele frequency by considering the level of contamination (alpha). The important features of Virmid are: •Estimation of accurate proporation of control sample in a (mixed) disease sample •Improved SNP and somatic mutation calling with regard to the estimated proportion -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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VoIP Honey project provides a set of tools for building an entire honeynet, thus includes honeywall and honeypot emulating VoIP environments such as Asterisk PBX or OpenSer with fully configurable connections. Voip Honey runs on GNU/Linux and Windows Systems. It can be compiled for Mac OSX as well.
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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NG-CloudMS
Next Gen Cloud Management System (NG-CloudMS)
Next Gen Cloud Management System (NG-CloudMS) is a new web based end-to-end OCX management tool that is distributed by Opt/Net under GNU Public License (GPL). This prototype provides near real-time visibility of the networks and cloud infrastructures and interconnected computing and data storage resources. It therefore can assist the operators with visualisation and localization of the causes of potential incidents. -
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wmtsa-python
Discrete wavelet methods for time series analysis using python
Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and... -
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ANTS on CONDOR
Using buildtemplateparallel.sh from ANTS on Condor
*** NOTE: Any further updates or debugging will be made through github. Please go to: https://github.com/solleo/ANTs-Condor - SG (2014-07-22) Advanced Normalization Tools (ANTS; https://sourceforge.net/projects/advants/) is an extremely sophisticated image registration tool, which is often used in human neuroimaging analysis. As creating an unbiased study-specific template with a large number of subjects is highly demanding in computational load, parallelization is implemented in... -
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HRDAG
Framework for Hierarchical Graph Decomposition
This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets. -
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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phenotemp
phenological trends using NOAA AVHRR time series
Starting from GIMMS values as ascii data (each line will be treated as individual time series), the application can smooth the ts - values by applying different algorithm that are based on Fouriertransformation. Separation of seasonal figure as well as the detection of linear trends is possible. Possible breaks in longterm mean can be detected with a change-point analysis using CuSum algorithms. Phenological events such as start-of-season, day-of-max/day-of-min, end-of-season can be... -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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A 'Defect' Tracking System. This aims at providing a user friendly interface for users to track the 'defects' encountered while developing a software. Created using PHP, JGraph, JavaScript and MySQL RDBMS on Linux Platform with Apache.
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The CM Engine translates digital images of rectangular plates that contain gridded colonies into quantitative data. It currently contains 3 analysis modes to ensure accurate measurements no matter how cells are deposited onto the agar.
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Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.
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Weka4OC GUI for Overlapping clustering
Weka4OC: Weka for Overlapping Clustering is a GUI extending WEKA
This is a GUI application for learning non disjoint groups based on Weka machine learning framework. It offers a variety of learning methods, based on k-means, able to produce overlapping clusters. The application also contains an evaluation framework that calculates several external validation measures. The application offers a visualization tool to discover overlapping groups. -
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Gpf4Med
Graph Processing Framework for Medical Information
Gpf4Med is a graph processing framework for clinical data, which can leverage from previously existing medical database and Cloud computing facilities to address large-scale studies. -
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AsphaltOpen is a project to visualize data collected during road asphalting operations. Asphalt contractors can use the software to visualize their operations, learn from the visualizations, and improve their processes continually.
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LExAu: Learning Expectations Autonomously. Library for on-line data driven statistical machine learning.
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Media Cloud allows automated downloading and analysis of on-line media. It is intended to automate what was previously a tedious process of painstaking manual content analysis.
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DocCO
Non-disjoint groupping of Documents based on word sequence approach
This is a GUI for learning non disjoint groups of documents based on Weka machine learning framework. It offers the possibility to make non disjoint clustering of documents using both vectorial and sequential representation (word sequence approach based on WSK kernel). All data format supported by WEKA could be used in DocCO. Data could be loaded from files, from databases or from specified URL. All the preprocessing techniques implemented in WEKA could be used before performing the learning. -
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K Boinc Client
KBC is a UI for the BOINC Client of the Berkeley University
K Boinc Client is a UI for the BOINC client of the Berkeley University. The program is oriented in look and feel of the Boinc manager based on wxWidgets. K Boinc client offers a KDE4 application, with a better integration into the KDE desktop. -
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Patient Monitor
Patient monitor showing actual and simulated data
In intensive care units (ICU) patients vital signs are monitored. This is an attempt to build an interface which can show external and simulated medical data, to mimic these patient monitors. The motivation for this project are my experiments with building medical devices.