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NOTE THAT THE SOURCE CODE AND ISSUE TRACKER HAVE NOW MOVED TO GITHUB. FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.

...All the contents of this repository can be considered public domain. For more information about my copyright/authorship attribution ideas, visit https://customsolvers.com/copyright/. IMPORTANT NOTE This project is a mirror of the repository FlexibleParser_Java in my GitHub account (varocarbas). Both versions are fully synchronised and immediately updated with any change.

...A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a

A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team

Java JNI API for morphological analysis of Russian. Note: C++ JNI code and the core code is at the project http://sourceforge.net/projects/seman/ .

jWordSplitter is a small Java library that splits German compound words into their parts. IMPORTANT NOTE: this software is not maintained at sourceforge anymore, it has been moved to github at https://github.com/danielnaber/jwordsplitter

An implementation of "k-Way Merging" as described in "Fundamentals of Data Structures" by Horowitz/Sahni. NOTE: This project has been moved to http://code.google.com/p/kway/

A Java package to read and manipulate graphs in the GXL (Graph eXchange Language) format, as well as providing a GXL graph editor. Note from admin: This project is discontinued, send me a message if you want to take over.