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Digital graph 1.3 is an advanced JAVA SWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.
The Information Visualization Cyberinfrastructure is a graphical tool with diverse modeling, analysis, and visualization algorithms for education and research. This tool is built on CiShell: Cyberinfrastructure Shell.
JudoScript is a general-purpose, Java scripting, multi-domain scripting tool/language. It combines the powers of declarative scripting for many modern tasks and general object/procedural programming. It is simple, intuitive, practical and powerful.
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Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
Framework for storing and editing Forestry-related XML data, with a specialised graphical interface for each object type. Plug-in API for adding functionality. Coded in Java, uses WebStart for distribution, swing GUI, ~100k lines of code.
Framework for Query Expansion for Apache Lucene. Provides implementation of Rocchio Query Expansion (QE) method. Provides implementation of pseudo feedback QE utilizing Google's web API to query the world wide web in order to acquire terms for QE.
WordFreak is a java-based linguistic annotation tool designed to
support human, and automatic annotation of linguistic data as well as
employ active-learning for human correction of automatically annotated
data.
The Annotation Graph Schema API aims to aid developers in the creation and querying
of Annotation bases where the use of XML-based tools is needed. It is easily integratable with any persistent representation and has a flexible in-memory model.
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JUDGE (Java Utility for Document Genre Eduction) features automatic classification and clustering of documents, optionally as a webservice.
The program is written entirely in Java and makes use of the Weka machine learning toolkit.
MEASJ, the Multiply Extensible Architecture Simulator in Java, is a Framework for creating Simulations and Emulations of von Neumann architecture based systems.
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
MODVLO7 provides an environment for exploring harmonic prolongations in any piece of tonal music. It imports Scala files, and saves Scala files for future changes or study, and for rendering MIDI files in just intonation using Scala.
The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
Kaph provides a portable (written in Java) method by which to display and guide users through multiple-subject research surveys. Configuration is handled via XML files. Support for a wide range of types of questions is provided.
Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.
A Java-based client-server architecture for processing network intrusion detection data. The server receives XML alerts from Snort sensors buffers them for review by clients. The console provides a real-time view of IDS activity.
Aware.MPS is a maintenance productivity suite designed to measure productivity, set productivity goals, and track progress toward those goals. It is best combined with a CMMS system to monitor productivity and suggest areas for productivity improvement.
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
SNARLI (Simple Neural ARchitecture LIbrary) is a Java package containing a back-prop layer class and classes for the Self-Organizing Map and Incremental Growing Grid. The back-prop class supports sigma-pi connections and back-prop-through-time.