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TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
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MODVLO7 provides an environment for exploring harmonic prolongations in any piece of tonal music. It imports Scala files, and saves Scala files for future changes or study, and for rendering MIDI files in just intonation using Scala.
The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
The aim of the application is to classify websites into exclusive (requires log-in and registration) and non-exclusive. Further enhancements will include identifying the registration form and registration fields (if the website is exclusive), etc.
Kaph provides a portable (written in Java) method by which to display and guide users through multiple-subject research surveys. Configuration is handled via XML files. Support for a wide range of types of questions is provided.
Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
A Java modular system for inquiry people via internet or using PDA. The system lets analize the results via statistic methods and print reports and graphics.
Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.
GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work
The Internet Censor is a multi-platform, Internet clustering program, for which the resulting data will be used in the creation of a non-profit content-filtering Internet Search Engine for children.
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
A complete suite of market research tools utilizing open standards and capable of running on multiple server and client platforms. Includes software for sample management, survey design, programming, data collection, tabulation, coding, weighting, etc
SNARLI (Simple Neural ARchitecture LIbrary) is a Java package containing a back-prop layer class and classes for the Self-Organizing Map and Incremental Growing Grid. The back-prop class supports sigma-pi connections and back-prop-through-time.
HyperSpider (Java app) collects the link structure of a website. Data import/export from/to database and CSV-files. Export to Graphviz DOT, Resource Description Framework (RDF/DC), XML Topic Maps (XTM), Prolog, HTML. Visualization as hierarchy and map.
Stynalyser is a tool that analyses the style of a text. It extracts several variables measuring the text style and displays the results. Export to other analysis programs possible. Programmed in Perl and Java.
InfoML (see InfoML.org) is a standard for storing units of information--especially human thoughts--and making connections among them. This project is the first step toward building applications that implement new ways of manipulating information
Chameleon is a rule-based expert system to assist farmers in semi-arid areas to prevent bush encroachment.
It runs as a web-application on a Tomcat server with MySQL and is based on the Mandarax library for deduction rules and its front-end, Oryx.
HORUS is a system for knowledge acquisition, hypothesis generation, inference and learning. It is an interactive, internet environment accessible to a diverse community of users (public-access or membership basis) - see also UMKAILASH project for more.