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MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
The Handwritten project aims to provide software for open distribution of handwritten notes. A rudimentary datastructure containg strokes made by writing devices as for example palm computers, digital pens, etc, is implemented in both Java and C.
brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).
Celerity, an open-source, Java based data-flow architecture that provides high performance with fine data granuality. Celerity offers a module based programming environment, which can parrellelize across processors, machines and architectures.
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A mechanism for identifying, acquiring, transforming, and serving data from multiple geographically diverse, heterogeneous data sets from a common data portal. This work is funded by a NASA Advanced Information Systems Technology (AIST) grant.
Development of a multi platform application designed to allow the web access flow of any kind of data but keep the things simple, customizable and secure.
JavaMatch is an engine that can search inside a runtime Java data structures, and look for objects that best match the criteria that you specify. The extensive query mechanism allows for highly customizable tuning of your match queries.
WordFreak is a java-based linguistic annotation tool designed to
support human, and automatic annotation of linguistic data as well as
employ active-learning for human correction of automatically annotated
data.
Graphl is a generic graph visualization and manipulation tool written in Java. Graphl reads and writes RDF files, visualizes them in a flexible and customizeable way and allows users to edit them intuitively. Please see project homepage for more info...
Pattern recognition system written in Java.
Provide statistical informations about satellite and medical imagery; and also recognize symbols in a gaussian blur.
The Annotation Graph Schema API aims to aid developers in the creation and querying
of Annotation bases where the use of XML-based tools is needed. It is easily integratable with any persistent representation and has a flexible in-memory model.
TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
Niamtool v2 is a graphical drawingtool for creating NIAM-diagrams (Niam is Nijssen Information Analyses Method) As far as we know is the only niam-drawingtool in existance (excluding Niamtool v1). It\'s written in java 1.4.
ZATreeX is a data manager with two control panels. The difference with conventional data managers is its ability to manage any tree structured data:you just have to implment a java interface. It is also able to extend it functionality (another interface)
Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work
A Java-based client-server architecture for processing network intrusion detection data. The server receives XML alerts from Snort sensors buffers them for review by clients. The console provides a real-time view of IDS activity.