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PROMPT is a system for retrieval, analysis, mapping and comparison of proteins. It allows easy mapping of different types of sequence IDs, data retrieval and integration, a multitude of analysis and comparison algorithms and a full-blown easy to use GUI.
The Cornell Tree-Ring Analysis System. A program for several aspects of dendrochronology: measuring, indexing, crossdating, graphing, summing masters, and even drawing maps of locations of sites.
This project intends to create an indexing search engine, for knowledge management. The primary object is to apply an information retrieval core. And implement a knowledge data discovery theory such as data mining algorithm, text mining.
Vizumine helps the data analyst to extract information of the data. It creates association rules of a large set of items and provides tools to analize these rules.
The Semantic Web Service Composer is a prototyp for semi-automatic data flow design between Semantic Web services described in different domain ontologies. More info: http://citeseer.ist.psu.edu/viewdoc/versions?doi=10.1.1.60.9276
AmiGram is the AMI Graphical Representation and Annotation Module. It is a general-purpose tool for multimodal corpus annotation and allows the time line based annoation of NXT corpora in a layer based environment.
FormatCheck screens flat files looking for violations in the format of the data. It uses a set of XML files that define the rules for each file format. The Swing front-end allows the user to run the verification, view and print the errors.
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PROMI is a Platform for the Reuse of Ontologies through Merging and Integration. It imports ontologies represented as OWL, RDF(S), DDL, DTD and XML schemas and incrementally merges their contents using various matching algorithms.
This software make stats about countries in Hattrick (http://hattrick.org). About all the leagues and generate the results in a excel file. Its very easy to use, and written in Java.
A configurable knowledge management framework. It works out of the box, but it's meant mainly as a framework to build complex information retrieval and analysis systems. The 3 major components: Crawler, Analyzer and Indexer can also be used separately.
The UEMLFacilitator project aims to develop and evaluate a prototype GUI for defining and managing the Unified Enterprise Modelling Language version 2 (UEML2).
Thetis is a Java (OS-independent) application written to allow the linguistic and statistical analysis of the Homeric and Hesiodic Epic. Current achievement is the creation of a complete (and free) Thesaurus of the Homeric and Hesiodic poems.
Digital graph 1.3 is an advanced JAVASWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.
The Information Visualization Cyberinfrastructure is a graphical tool with diverse modeling, analysis, and visualization algorithms for education and research. This tool is built on CiShell: Cyberinfrastructure Shell.
Wordcorr automates the tedious and risky process of tabulating and managing the sound correspondences used in working out the historical development of natural languages. Initial support was from NSF.
MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
ZATreeX is a data manager with two control panels. The difference with conventional data managers is its ability to manage any tree structured data:you just have to implment a java interface. It is also able to extend it functionality (another interface)
a cross-platform application to decode, search, browse, view, print, and export TLG/PHI BetaCode texts. Project is currently being ported from wxWindows to Java. (For more info, see the project homepage at http://wxtlg.sourceforge.net)
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.