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JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file.
hexcompare is a curses-based utility to compare and identify differences between two binary files. These differences are then represented visually with an interactive block diagram.
File-Spector is a small, fast and easy to use binaryfile analyzer and Inspector.
It allows the users to format a complete binaryfile structure and then use it to read any binaryfile that matches the specified format.