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JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file.
BinCoMerge is a binary files diff at byte resolution. It shows hexadecimal and raw ASCII data.
BinCoMerge is seeking for common blocks from the bigger ones to the lower ones. It works by levels of minimum block sizes which are powers of 2. For example, with a file sizing between 16 KiB and 32 KiB, Bincomerge will firstly seek for all common blocks bigger than 16 KiB.