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Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
Xmipp is a well-known package in the EM image processing. It is integrated...
ORPAL is a reference manager utilizing a relational database. The interface focuses on easy searching, note-taking, and electronic article storage, but also supports traditional citation and bibliography management (in APA and MLA formats).
NOTE: Use Fltk_Contour insted this code! FMesh is a simply scientific data visualization tool based on OpenGL. FMesh can generate 2D and 3D graph of contour and color maps for any (x,y,z) scattered data set, many other options are included.
A tag based personal notetaking system, written in python using sqlite.
This program is designed to help you organize your thoughts. It uses tags in a way similar to Gmail's "labels" or del.icio.us tags. Any contribution welcome!
A Java package to read and manipulate graphs in the GXL (Graph eXchange Language) format, as well as providing a GXL graph editor. Note from admin: This project is discontinued, send me a message if you want to take over.