Open Source Information Analysis Software - Page 66

CNV calling software may produce false-positive calls due to imperfect source material. Direct inspection of the microarray data with the noise-free-cnv software helps to appreciate the quality of the data and to identify artificial calls. With noise-free-cnv it is possible to visualize individual datasets, to compare different datasets and to perform simple transformations. The visualization and the suppression of genomic waves, the comparison of two datasets by subtraction and the simultaneous inspection of LRR and BAF values are amongst the most frequent applications of this software. This program is able to read and write files suitable for PennCNV or raw files containing measured values of any kind.

This project is built on the premise that neurons that are fired together, are wired together. The basic idea is an efficient network with no back-propagation, although there is feedback within layers.

The open bicycle computer (oBiCo) is an outdoor computer to be mounted on your bike. We are providing an open source based plattform to ether use Linux based software or go with a small GPL'ed C++ OS (Booting in just 2 seconds)

oBrowse is a web based ontology browser developed in java. oBrowse parses OWL files of an ontology and displays ontology in a tree view. Protege-API, JSF are used in development.

OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets.

A small command line tool to process streams of numbers and spit out the running total, bin the results or merge duplicates. Supports arbitrary precision numbers. ocdf is named for the cumulative distribution function in probability.

Ontea - Pattern based Semantic Annotation Platform. Ontea search or create semantic meta data from text or documents using pattern based approaches. Implementation currently includes regular expressions (regex) patterns

This is an ooRexx line-by-line port from Ansi-C to ooRexx of the stemming routine published by Martin Porter 1980. The original source code from Porter has been commented out and emulated by the corresponding (oo)Rexx code as far as possible. This is not an example of good or fast (oo)Rexx programming, it is merely a demonstration of the Porter stemming routine ported to ooRexx, use and modify as necessary. Input to the program is a textfile with words to be stemmed, one per line. Output from the program ends up in the terminal window (standard out) and may be redirected to an output file. Syntax: rexx ooPorter myInputfile.txt > myOutputfile.txt The program only works for stemming English words. The source code is distributed under a free beer license; you are free to use the ooRexx source code as you please and no restrictions whatsoever apply as far as the type of beer is involved.

A tool for autonomous and virtual topical data integration using the focused web-harvesting method.

OpenMEDIS is a simple, flexible, and standardized tool to collect (inventory) and process (manage) information on health technology infrastructure, e.g. medical devices in low- and middle income countries. The latest source code is available in the folder Code/trunk. There are also sub-projects of openMEDIS that contain the source-code of installations in each country.

A general OWL reasoning framework for the analysis of big biomedical data and implement a MapReduce-based property chain reasoning prototype system. OWL reasoning method is ideally suitable for problems involved complex semantic associations because it is able to infer logical consequences based on a set of asserted rules or axioms. MapReduce framework isused to solve the problem of scalability. In our experiment, we focus on the discovery of associations between Traditional Chinese Medicine (TCM) and Western Medicine (WM).

The project aims at developing and maintaining owlutils - a collection of unixish command-line utilities for processing ontologies stored in owl files.

The simulator of the file share system by pear to pear

Simple console program intended for factor or principal components analysis. It calculates the optimal number of factors using the Horn's parallel analysis, computes the Kaiser-Meyer-Olkin and a few other measures of sampling adequacy.

A parser for patch (diff) files written as a Python module around the GNU patch code.

Automated peak fitting and spectrum calibration program.

Real-time data visualization. Graphically view your data as it's being generated. Peakster is a very intuitive GUI written entirely in Python, which monitors data at regular intervals and uses gnuplot to render 2D, 3D and superimposed plots.

Starting from GIMMS values as ascii data (each line will be treated as individual time series), the application can smooth the ts - values by applying different algorithm that are based on Fouriertransformation. Separation of seasonal figure as well as the detection of linear trends is possible. Possible breaks in longterm mean can be detected with a change-point analysis using CuSum algorithms. Phenological events such as start-of-season, day-of-max/day-of-min, end-of-season can be determined via threshold-based algorithms or via analysis of max. increase of NDVI during green-up. These analyses work also for multimodal phenologies where individual seasons (partly) interfere each other. User can navigate through all steps of analysis via GUI or can define complex workflows that will be processed in batch-mode.

phpMySetiStats is a tool for displaying SETI@home statistics of running processes and personal statistics from Berkeley. It uses MySQL on backened. Crontab is also recommended.

phpMyVisites is a Web traffic analyzer with very detailed reports and advanced graphics. It is not an Apache log analysis tool. phpMyVisites creates its own logs, and it allows access to more complete statistics. phpMyVisites provides information about v

phpTrafMon is a set of scripts written in php. It shows in an attractive and user-friendly way the traffic in a local network and a share in it of every user. phpTrafMon requires MySQL, crontab and a popular IPFM program.

This software is the going to be used in a small office refrigerator to controll the thermostat. Currently the code is written for the PIC16F84 in assembler. The code is fully compilable in MPLAB.

representation by relations vs data storage. pile unifies the contradicted qualities of tables/trees (databases) and complex networks, order and flexibility. dynamical data generation on call. fast. natively compressing similarities. search across scopes.

plSTDF is a set of functions to work with Teradyne STDF file format, using PERL.

The platestats software aims to provide a convenient solution for analyzing the results of biological assays performed in 96- and 384-well plates.