Showing 693 open source projects for "open java projects"

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  • 1

    P-VCD

    Content-Based Video Copy Detection

    Software for Video Copy Detection. The software has been described in some scientific papers, e.g. http://dx.doi.org/10.1109/ICME.2011.6012212 and http://dx.doi.org/10.1007/s11042-011-0915-x. This software is the result of my PhD at the University of Chile and the participation at TRECVID Content-Based Copy Detection (CCD) evaluation task 2010 and 2011. More details in http://www-nlpir.nist.gov/projects/tv2011/tv2011.html#ccd and in...
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  • 2
    GESPA

    GESPA

    Accurately predicts disease association of single nucleotide mutations

    GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are...
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  • 3

    ProC 3.0

    smart Workflow Engine

    ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission.
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  • 4
    Biological Network Analyzer
    Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
    Downloads: 0 This Week
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  • 5
    Text Expander, Inverse summarizer

    Text Expander, Inverse summarizer

    Expand text, inverse summarizer

    ...It can be used with any text or notes that have the knowledge gaps. It is a great aid to any creative work and it simply pin-points to data that may be of some relevance. How to run this program? 1. Make sure JAVA 1.7 development is installed and running/compiling properly with all environment variables properly set. 2. Uncompress the LITE release into a desired directory. 3. Go to a src/ directory with a Terminal/Console/Command-Prompt and do the following: javac Te2.java java Te2 The program should open.
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  • 6
    Malware Analysis Network in Taiwan <Man in Taiwan, MiT> Welcome to contact us (TonTon@TWMAN.ORG) if you are interested in collaborating with us. This project is open source and distributed under the GNU General Public License version 3. Please feel free to add to or modify this source and propose changes or new converters. Developer & Copyrighted by : TonTon Hsien-De Huang Prompter: Jazz Yao-Tsung Wang, Figaro Chen-Ho Yang | Logo Desinger:Temaki Guo Community on Google+:http://X.TWMAN.ORG/Community/ SourceForge: https://sourceforge.net/projects/twmanplus/files/ FaceBook: https://www.facebook.com/TWMAN.PLUS
    Downloads: 1 This Week
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  • 7
    OpenIMAJ
    OpenIMAJ: The Open toolkit for Intelligent Multimedia Analysis in Java. OpenIMAJ contains a large collection of pure-Java classes for analysing multimedia documents, from tools for extracting image features, to tools for analysing web pages.
    Downloads: 0 This Week
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  • 8

    Dynamic Queries

    Project to dinamically export queries to Excel, PDF and Jasper Viewer

    Project to execute SQL queries from an SQL file. Once the file is loaded you can export the result to an Excel or PDF file or to view it with Jasper Viewer. The file loaded can be seen in a textarea. This textarea is editable so that you can edit your query at runtime and export it. For the time being you can't include parameters to the query. The best of this project is that you really don't know how many columns of the table of your database are and this project dinamically does this.
    Downloads: 0 This Week
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  • 9
    NDN Backprop Neural Net Trainer implements the backpropagation functionality subset of the open source NeuronDotNet object library in a generic user friendly application.
    Downloads: 0 This Week
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  • 10

    MinerBuddy

    Something simpler than R and focused on visualisation

    Something simpler than R and focused on visualization of multivariate float datasets. Developed mostly for my personal use, but can't exclude the possibility that it will be useful for someone else.
    Downloads: 0 This Week
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  • 11

    SoNIA (Social Network Image Animator)

    Social Network Image Animator creates animations of network data

    SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/
    Downloads: 0 This Week
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  • 12
    C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
    Downloads: 0 This Week
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  • 13
    XBM

    XBM

    eXtensible Behavioral Modeling (XBM) framework

    Impact Computing's eXtensible Behavioral Modeling (XBM) framework is an open, flexible and customizable platform providing integrated access to an extensible hybrid combination of modeling, simulation and visualization tools.
    Downloads: 0 This Week
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  • 14
    The software annotates text with 41 broad semantic categories (Wordnet supersenses) for both nouns and verbs; i.e., it performs both sense disambiguation and named-entity recognition. The tagger implements a discriminatively-trained Hidden Markov Model.
    Downloads: 0 This Week
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  • 15

    HRDAG

    Framework for Hierarchical Graph Decomposition

    This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets.
    Downloads: 0 This Week
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  • 16

    Khawas

    An Arabic Corpora Processing Tool

    The new version is available at https://sourceforge.net/projects/ghawwasv4/
    Downloads: 2 This Week
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  • 17

    picard

    A set of tools for working with high-throughput sequencing data

    A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team
    Downloads: 5 This Week
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  • 18

    Deem

    Analyze time-course data with significance tests, clustering, modeling

    Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional...
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  • 19
    Graph-RAT
    Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
    Downloads: 0 This Week
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  • 20
    SCAN
    SCAN (Smart Content Aggregation and Navigation) is a universal semantic content aggregator. It combines search, text analysis, tagging and metadata functions to provide new user experience of desktop navigation and document management.
    Downloads: 6 This Week
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  • 21
    The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
    Downloads: 0 This Week
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  • 22
    KeplerDB

    KeplerDB

    Timeseries databases management system

    KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling).
    Downloads: 0 This Week
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  • 23
    The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
    Downloads: 5 This Week
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  • 24
    JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
    Downloads: 0 This Week
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  • 25

    DSOL

    DSOL: A Distributed Simulation Object Library implemented in Java

    DSOL is a full featured multi-formalism, distributed simulation environment developed at Delft University of Technology (The Netherlands). DSOL has support for discrete event and for continuous modeling. Formalisms supported are event scheduling, DEVS, flow-based simulation, and continuous modeling through sets of differential equations. The first release was introduced at IEEE's Winter Simulation Conference in 2002. Since then, numerous papers and PhD dissertations have been developed, with...
    Downloads: 4 This Week
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