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Annotation and enrichment of Next-Gen sequencing data
Note: This version requires additional SQLite database files. Contact the developers to obtain them.
Use http://www.integrativegenomics.org/ for the latest data and analyses.
GenomeRunner is a tool for automating genome exploration. It performs annotation and enrichment analyses of user-provided genomic regions (SNPs, ChIP-seq binding sites etc.) against >6,000 (human genome) epigenomic features available from the UCSC genome browser.
Input - any genome-wide data data in .bed...
G.R.E.A.T. - Google Earth Reporting Engine and Analysis Tool The Goal of this project is to create a basic IDS interface with Google Earth. Currently generates a KML file of traceroute/whois information suitable for use in Google Earth
Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.
Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
LM - Report Asistent will be an utility, that helps dataminers, who use LISP-Miner, with writing analytical repostrs. Report Asisten will connect LISP-Miner with MS Word (R) editor.
Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.
Digitizer program to manually digitize data from graphic images. Allows for multiple calibrations and source image files for a single set of data series. Also includes an auto-export feature to streamline interoperability.
Fuzzy logic add-in for OpenOffice.org Calc. InrecoLAN FuzzyMath allows to perform ordinary arithmetic operations and use ordinary mathematical and financial functions with fuzzy numbers. Have any ideas how to improve this project - you are welcome!
This Tool allows you to analyze logfiles create in RaceChrono (http://www.racechrono.com) on your computer. Top speed, distance, acceleration, speed graph, altitude profile, export to GPX and more features are coming in the next versions.
GUI based VB.net line count program for multiple extensions. The count is executed by folder, not by individual files. Includes the option to create and save the count to an excel workbook. Counts are accurate for .cpp and .h file types.
This is a simple application designed to allow managers in a clinical setting to record and track an employees infectious diseases. The info could then be used for statistical analysis and for the prevention of future infections.
Want to count the number of syllables in a word? Want to create a random haiku? This Java application can do both. Just add the JAR file to your project for access to these basic classes. We use CMU's pronunciation dictionary to count each syllable.
Datamixer generates mock data values for various datatypes, including integer, floating precision, datetime, and string. It can generate complex sequences, based on functions and permutations of the basic data series.
Bayesian Surprise Matlab toolkit is a basic toolkit for computing Bayesian surprise values given a large set of input samples. It is also useful as way of exploring surprise theory. For more information see also: http://ilab.usc.edu/
The MIX program is meta-analysis software for Excel 2000 or 2003 that works like a standalone application. This version of MIX, however, is no longer maintained and replaced my MIX 2.0. MIX 2.0 can be found at http://www.meta-analysis-made-easy.com.
This project is built on the premise that neurons that are fired together, are wired together. The basic idea is an efficient network with no back-propagation, although there is feedback within layers.
Special Population Planner: A GIS-based emergency planning tool for all-hazards analysis. It is tailored for planning for the needs of persons with special needs, but can be easily adapted to other uses. It runs within ESRI ArcGIS 9.1 to 9.3.0.
Refal.NET - Versatile, Compact yet Powfull Text Transformer and Compiler-Writing System. Based on Refal.NET Virtual Machine (+Refal.NET Compiler), this RAD-tool might be used for rapid prototyping, decreasing up to 10 times development efforts.
Hillmaker is a Microsoft Access add-in that can be used to create statistical and graphical summaries of arrival, departure and occupancy patterns by time of day for systems (e.g. hospitals) having entities flowing into and out of some location.
This tool acts as a preprocessor and transforms data from a database into arff format for weka data mining. Vertical to horizontal transformation for association analysis. The tool can use databases for which an OleDB adapter exists. Vb.Net for Win32
...Objectives are to make an OCR, fingerprint and face identification as some applications through a general purpose learning and pattern relationships algorithm (Currently performs very basic identification).