Showing 1577 open source projects for "java open source"

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  • 1
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
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    Downloads: 18 This Week
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  • 2
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 10 This Week
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  • 3
    Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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    Downloads: 401 This Week
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  • 4

    TabuVis

    An Interactive Visualisation for Tabular Data

    TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. The project is available at: http://staff.scem.uws.edu.au/~vinh/projects/TabuVis/ Related...
    Downloads: 0 This Week
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  • 5
    GATE
    NOTE THAT THE SOURCE CODE AND ISSUE TRACKER HAVE NOW MOVED TO GITHUB. FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
    Downloads: 0 This Week
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  • 6
    CRC RevEng

    CRC RevEng

    Arbitrary-precision CRC calculator and algorithm finder

    CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 113 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams'...
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    Downloads: 117 This Week
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  • 7
    asammdf

    asammdf

    Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)

    *asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4
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    Downloads: 64 This Week
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  • 8
    Lush is a Lisp dialect with extensions for object-oriented and array-oriented programming. Lush is intended for prototyping numerically intensive applications and is designed for easy integration of existing C/C++/Fortran codes.
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    Downloads: 43 This Week
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  • 9
    SPPAS

    SPPAS

    SPPAS - the automatic annotation and analyses of speech

    SPPAS is a scientific computer software package written and maintained by Brigitte Bigi of the Laboratoire Parole et Langage, in Aix-en-Provence, France. Available for free, with open source code, there is simply no other package for linguists to simple use in the automatic annotations of speech, the analyses of any kind of annotated data and the conversion of annotated files. SPPAS is able to produce automatically speech annotations from a recorded speech sound and its orthographic transcription. SPPAS is helpful for the analysis of any annotated data: estimate statistical distributions, make requests, manage files, visualize annotations. ...
    Downloads: 28 This Week
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  • 10
    Ellogon is a multi-lingual, cross-platform, general-purpose language engineering environment.
    Downloads: 0 This Week
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  • 11
    OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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    Downloads: 25 This Week
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  • 12
    LinAsm

    LinAsm

    Collection of fast and optimized assembly libraries for x86-64 Linux

    LinAsm is collection of very fast and SIMD optimized assembly written libraries for x86-64 Linux. It implements many common and widely used algorithms for array manipulations: searching, sorting, arithmetic and vector operations, unit conversions; fast mathematical and statistic functions; numbers and time converting algorithms; finite impulse response (FIR) digital filters; spectrum analysis algorithms, Fast Hartley transformation; CPU cache friendly functions and extremely fast abstract...
    Downloads: 17 This Week
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  • 13
    QChartist

    QChartist

    Free and Open Source Technical Analysis Charting Software

    QChartist is a free and open source technical analysis charting software. Its purpose is to provide a complete set of tools to perform technical analysis on charts and data. It helps to make forecasts mainly for markets but can also be used for weather or any quantifiable data. The program is flexible and its functionalities can be easily extended. You can draw geometrical shapes on your charts or plot programmable indicators from your data.
    Downloads: 17 This Week
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  • 14

    Graph Plotter

    GP is a tool to analyse numerical data

    GP is aimed to be simple and fast tool to analyse numerical data. It does not claim to replace all other plotters.
    Downloads: 6 This Week
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  • 15
    LabPlot

    LabPlot

    Data Visualization and Analysis

    LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.
    Downloads: 30 This Week
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  • 16
    This is an implementation of brazilian portuguese metaphone. Its importance is on strings lookups like names, streets names, words (aspell) etc, made as simple as possible. There is a very large text analysis field to explore with it.
    Downloads: 5 This Week
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  • 17
    Leaklog
    Leaklog is a leakage control system based on Regulation (EC) No 842/2006. It logs findings and parameters of leakage checks, shows a history of the development of parameters, compares them with nominal ones and calculates the percentage of leakage.
    Downloads: 6 This Week
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  • 18
    Uranie

    Uranie

    Uranie is CEA's uncertainty analysis platform, based on ROOT

    Uranie is a sensitivity and uncertainty analysis plateform based on the ROOT framework (http://root.cern.ch) . It is developed at CEA, the French Atomic Energy Commission (http://www.cea.fr). It provides various tools for: - data analysis - sampling - statistical modeling - optimisation - sensitivity analysis - uncertainty analysis - running code on high performance computers - etc. Thanks to ROOT, it is easily scriptable in CINT (c++ like syntax) and Python. Is is...
    Downloads: 5 This Week
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  • 19
    FitBio

    FitBio

    Application for analysing Take-Out files, e.g. from FitBit SmartWatch.

    This application takes a so-called "Take-Out" ZIP file that has been downloaded from a SmartWatch and allows to analyse the health and other recorded data it contains. It allows to plot several data items and export specific data into CSV files for further use, e.g. with spreadsheet tools like Excel. It has been validated to work with Google and FitBit SmartWatches but will also work with similar data tracker archives.
    Downloads: 2 This Week
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  • 20
    QSAS
    Analysis and display software targeted at space physics data. Installation instructions are at the bottom of the FILES directory. See documentation at https://qsas.sourceforge.io/QSAShelp/QSAS_help_index.html See also QSAS_Intro_June2018.pptx under FILES Contact: qsassupp@gmail.com E-Mail lists: qsas-users@lists.sourceforge.net qsas-discuss@lists.sourceforge.net
    Downloads: 3 This Week
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  • 21
    Libro

    Libro

    An interactive program for statistical analysis of texts

    A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade,...
    Downloads: 2 This Week
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  • 22
    Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.
    Downloads: 2 This Week
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  • 23
    [ARCHIVAL] The central forum for the MWE community. Share your open-source data sets and MWE extraction tools, exchange ideas on evaluation strategies and further development of the tools, and discuss theoretical definitions and linguistic properties of MWEs.
    Downloads: 0 This Week
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  • 24
    The Multivariate Regression Composer, a Matlab toolbox. It generates a regression model of the optimal structure. Uses the source data set, the initial models and the primitive functions.
    Downloads: 0 This Week
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  • 25
    ecang

    ecang

    Ethercat analyzer. Pcapng (by wireshark) to cvs files converter.

    To diagnose a problem or simply to study the internal flow of information in an ethercat fieldbus, one of the common practices is to capture the flow of ethercat datagrams with an ethernet sniffer such as Wireshark (www.wireshark.org). Wireshark provides some filters to facilitate data analysis but the high amount of recorded information still makes an analysis complicated for many people who do not have a very deep knowledge of the ethercat protocol and Wireshark tools. Ecang can help...
    Downloads: 1 This Week
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