Search Results for "segmentation"
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Showing 20 open source projects for "segmentation"
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. Wrapping of the C++ code is accomplished through SWIG, in principle, any language wrapped by SWIG should be applicable to SimpleITK. ... -
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Medical Img Segmentation Suite
A software providing easy ways to segment structures in medical images
- 15 segmentation tools (FloodFill Strict, Adaptive Gaussian Threshold, Manual Brush (Freehand Lasso), Polygon Lasso (Click Points), Manual Bounding Box, Auto Bounding Box, Local Otsu Auto-Threshold, K-Means Clustering, Watershed, GrabCut AI, Canny Edge + Morphological Close, Morphologic Active Contours, Interactive Heatmap, Topographical Relief Map, Segment Anything AI) - Hybrid Layout (1 window with editor tools or Split-View with a preview window) - Intelligent file management (once a folder is loaded, the system recognizes which files already have masks and leaves them in the background) - Real-time filter application (CLAHE, Global Histogram Equalization, Top-Hat, Bottom-Hat, Multi-Scale Retinex, Homomorphic Filter, Sharpness Control) - Three mask and label options (conventional masks in - Lesion shape, lesion region bounding boxes, and heatmap to outline the lesion and its secondary components) - Brush/cursor sensitivity control... -
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ShinyCardinal
Mass spectrometry imaging data analysis software tool
ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a... -
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Comic panel detection
Program, written in python, which detect panels in comics
Program, written in python, which detect panels in comics, based on Max Halford's tutorial "https://maxhalford.github.io/blog/comic-book-panel-segmentation/". It allows you to process Jpg/Png images in a folder , and then save the individual panels in a folder or in a single pdf file. Unfortunately it is far from perfect and makes many mistakes especially with "black and white" comics. -
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WingSegment
WingSegment: A tool for Analysis and Modeling of Insect Wings
WingSegment is a MATLAB app-designed tool employing a hybrid approach of computer vision and graph theory for precise insect wing image segmentation. WingSegment detects cells, junctions, Pterostigma, and venation patterns, measuring geometric features and generating Voronoi patterns. The tool utilizes region-growing, thinning, and Dijkstra's algorithms for boundary detection, junction identification, and vein path extraction. It provides histograms and box plots of geometric features, facilitating comprehensive wing analysis. ... -
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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GIMP ML
AI for GNU Image Manipulation Program
...It enables the use of recent advances in computer vision to the conventional image editing pipeline. Applications from deep learning such as monocular depth estimation, semantic segmentation, mask generative adversarial networks, image super-resolution, de-noising and coloring have been incorporated with GIMP through Python-based plugins. Additionally, operations on images such as edge detection and color clustering have also been added. GIMP-ML relies on standard Python packages such as numpy, scikit-image, pillow, pytorch, open-cv, scipy. ... -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used to solve various problems in materials science.
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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WrapImaJ
Multi-platform API for Image Processing systems in Life Sciences
WrapImaJ purposes to be a multi-platform wrapper for different Image Processing systems for: - using the Java programming language. The purpose of WrapImaJ is not to combine an exhaustive collection of all functionalities of different imaging system, but to offer a simple, concise Application Programming Interface (API) - allowing to develop imaging software, the source code of which is independent from the underlying imaging system on which it relies. In it's current form, it... -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
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Quant-CT
Micro-CT image stack segmentation and quantification
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MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
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Pink is an image processing library developed at ESIEE Engineering for research and teaching purposes. It contains implementations of over 200 algorithms for image segmentation and filtering.
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3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets
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Filters is a image processing library: filter sobel,convolution,morphology,vectorization,segmentation,blob,blur,histogram,susan,threshold,texture,contrast,standard deviation,canny,distance map,matrix,contour,edge,rotation,correlation,gradient anisotropic
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Fourier is a portable image processing and analysis library written in ANSI C. It implements operations such as color space conversions, noise removal, enhancement, morphology, edge detection, thresholding, segmentation, and visual feature extraction
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